CRISPRone

CRISPRone report for GCA_900166335.1_11670_1_41

♦ Seq 1: FUTZ01000001.1 Clostridioides difficile strain CD39 genome assembly, contig: ERS368484SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1267606 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 395348-395444 bp 2 Locus 2: 468726-477072 bp 3 Locus 3: 640490-641238 bp 4 Locus 4: 1013963-1014254 bp Zoom in on locus 1 x2 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x5 CRISPR array Location: 395348-395444 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 395348-395444 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 468726-469835 bp Gene: unk Type: unknown Location: 470294-470470 bp Gene: pfam01881:cas6 Type: other Location: 470571-471308 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 471313-472788 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 472808-473824 bp Gene: cd09693:cas5 Type: Type-I Location: 473840-474637 bp Gene: cd09641:cas3HD Type: Type-I Location: 474664-477072 bp CRISPR array Location: 640490-641238 bp Num of repeats: 12 Spacers: s2-s12 CRISPR array Location: 640490-641238 bp Num of repeats: 12 Spacers: s2-s12 CRISPR array Location: 1013963-1014254 bp Num of repeats: 5 Spacers: s13-s16 CRISPR array Location: 1013963-1014254 bp Num of repeats: 5 Spacers: s13-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 395348-395444 bp]: array | spacers
           [Locus range 640490-641238 bp]: array | spacers
           [Locus range 1013963-1014254 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUTZ01000007.1 Clostridioides difficile strain CD39 genome assembly, contig: ERS368484SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 210849 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 119106-119930 bp Zoom in on locus 1 x13 CRISPR array Location: 119106-119930 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 119106-119930 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 119106-119930 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUTZ01000013.1 Clostridioides difficile strain CD39 genome assembly, contig: ERS368484SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 92794 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27728-29066 bp Zoom in on locus 1 x21 CRISPR array Location: 27728-29066 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 27728-29066 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 27728-29066 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUTZ01000004.1 Clostridioides difficile strain CD39 genome assembly, contig: ERS368484SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 317517 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189924-190281 bp 2 Locus 2: 212555-215590 bp Zoom in on locus 1 x6 Zoom in on locus 2 x15 x4 x2 CRISPR array Location: 189924-190281 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 189924-190281 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 212555-213510 bp Num of repeats: 15 Spacers: s6-s19 CRISPR array Location: 212555-213510 bp Num of repeats: 15 Spacers: s6-s19 CRISPR array Location: 215125-215351 bp Num of repeats: 4 Spacers: s20-s22 CRISPR array Location: 215125-215351 bp Num of repeats: 4 Spacers: s20-s22 CRISPR array Location: 215495-215590 bp Num of repeats: 2 Spacers: s23-s23 CRISPR array Location: 215495-215590 bp Num of repeats: 2 Spacers: s23-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189924-190281 bp]: array | spacers
           [Locus range 212555-213510 bp]: array | spacers
           [Locus range 215125-215351 bp]: array | spacers
           [Locus range 215495-215590 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUTZ01000005.1 Clostridioides difficile strain CD39 genome assembly, contig: ERS368484SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 315209 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138081-139032 bp Zoom in on locus 1 x15 CRISPR array Location: 138081-139032 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 138081-139032 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 138081-139032 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUTZ01000008.1 Clostridioides difficile strain CD39 genome assembly, contig: ERS368484SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 165581 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 145994-147536 bp Zoom in on locus 1 x24 CRISPR array Location: 145994-147536 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 145994-147536 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 145994-147536 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUTZ01000002.1 Clostridioides difficile strain CD39 genome assembly, contig: ERS368484SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 476251 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 275228-285083 bp Zoom in on locus 1 x5 CRISPR array Location: 275228-275518 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 275228-275518 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09725:cas2 Type: universal Location: 275702-275968 bp Gene: cd09722:cas1 Type: universal Location: 275971-276951 bp Gene: pfam01930:cas4 Type: Type-I Location: 276954-277472 bp Gene: cd09641:cas3HD Type: Type-I Location: 277520-279841 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 279852-280553 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 280555-281469 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 281471-283348 bp Gene: pfam01881:cas6 Type: other Location: 283354-284148 bp Gene: pfam13280:WYL Type: other Location: 284169-285083 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 275228-275518 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)