CRISPRone

CRISPRone report for GCA_900166365.1_11670_1_19

♦ Seq 1: FUUD01000005.1 Clostridioides difficile strain CD18 genome assembly, contig: ERS368463SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 246977 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17949-18706 bp 2 Locus 2: 109434-114365 bp Zoom in on locus 1 x12 Zoom in on locus 2 x7 x4 x14 CRISPR array Location: 17949-18706 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 17949-18706 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 109434-109858 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 109434-109858 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 111462-111686 bp Num of repeats: 4 Spacers: s18-s20 CRISPR array Location: 111462-111686 bp Num of repeats: 4 Spacers: s18-s20 CRISPR array Location: 113479-114365 bp Num of repeats: 14 Spacers: s21-s33 CRISPR array Location: 113479-114365 bp Num of repeats: 14 Spacers: s21-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17949-18706 bp]: array | spacers
           [Locus range 109434-109858 bp]: array | spacers
           [Locus range 111462-111686 bp]: array | spacers
           [Locus range 113479-114365 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUUD01000017.1 Clostridioides difficile strain CD18 genome assembly, contig: ERS368463SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 68601 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63611-64760 bp Zoom in on locus 1 x18 CRISPR array Location: 63611-64760 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63611-64760 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63611-64760 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUUD01000002.1 Clostridioides difficile strain CD18 genome assembly, contig: ERS368463SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 568981 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44796-44890 bp 2 Locus 2: 305335-316342 bp Zoom in on locus 1 x2 Zoom in on locus 2 x23 CRISPR array Location: 44796-44890 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44796-44890 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 305335-306249 bp Gene: pfam01881:cas6 Type: other Location: 306270-307064 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 307070-308920 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 308922-309836 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 309838-310539 bp Gene: COG1203:cas3 Type: Type-I Location: 310550-312871 bp Gene: pfam01930:cas4 Type: Type-I Location: 312886-313437 bp Gene: cd09722:cas1 Type: universal Location: 313440-314420 bp Gene: cd09725:cas2 Type: universal Location: 314423-314689 bp CRISPR array Location: 314873-316342 bp Num of repeats: 23 Spacers: s2-s23 CRISPR array Location: 314873-316342 bp Num of repeats: 23 Spacers: s2-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44796-44890 bp]: array | spacers
           [Locus range 314873-316342 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUUD01000008.1 Clostridioides difficile strain CD18 genome assembly, contig: ERS368463SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 216072 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124574-125133 bp Zoom in on locus 1 x9 CRISPR array Location: 124574-125133 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 124574-125133 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124574-125133 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUUD01000003.1 Clostridioides difficile strain CD18 genome assembly, contig: ERS368463SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 378139 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86314-86474 bp Zoom in on locus 1 x3 CRISPR array Location: 86314-86474 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 86314-86474 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86314-86474 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUUD01000004.1 Clostridioides difficile strain CD18 genome assembly, contig: ERS368463SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 374882 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44385-44743 bp 2 Locus 2: 118025-126346 bp 3 Locus 3: 289602-290219 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44385-44743 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44385-44743 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 118025-119134 bp Gene: unk Type: unknown Location: 119568-119744 bp Gene: pfam01881:cas6 Type: other Location: 119845-120582 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120587-122062 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122082-123098 bp Gene: cd09693:cas5 Type: Type-I Location: 123114-123911 bp Gene: cd09641:cas3HD Type: Type-I Location: 123938-126346 bp CRISPR array Location: 289602-290219 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289602-290219 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44385-44743 bp]: array | spacers
           [Locus range 289602-290219 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)