CRISPRone

CRISPRone report for GCA_900166375.1_11670_1_50

♦ Seq 1: FUUE01000018.1 Clostridioides difficile strain CD47 genome assembly, contig: ERS368492SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 42482 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8032-11965 bp Zoom in on locus 1 x6 x6 CRISPR array Location: 8032-8388 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 8032-8388 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 11609-11965 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 11609-11965 bp Num of repeats: 6 Spacers: s6-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8032-8388 bp]: array | spacers
           [Locus range 11609-11965 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUUE01000021.1 Clostridioides difficile strain CD47 genome assembly, contig: ERS368492SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 31484 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7075-7367 bp Zoom in on locus 1 x5 CRISPR array Location: 7075-7367 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 7075-7367 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7075-7367 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUUE01000001.1 Clostridioides difficile strain CD47 genome assembly, contig: ERS368492SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 616738 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 319710-319804 bp 2 Locus 2: 564051-575203 bp Zoom in on locus 1 x2 Zoom in on locus 2 x25 CRISPR array Location: 319710-319804 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 319710-319804 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 564051-564965 bp Gene: pfam01881:cas6 Type: other Location: 565043-565780 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 565786-567636 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 567638-568552 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 568554-569255 bp Gene: cd09641:cas3HD Type: Type-I Location: 569266-571587 bp Gene: pfam01930:cas4 Type: Type-I Location: 571602-572153 bp Gene: cd09722:cas1 Type: universal Location: 572156-573136 bp Gene: cd09725:cas2 Type: universal Location: 573139-573405 bp CRISPR array Location: 573589-575203 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 573589-575203 bp Num of repeats: 25 Spacers: s2-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 319710-319804 bp]: array | spacers
           [Locus range 573589-575203 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUUE01000028.1 Clostridioides difficile strain CD47 genome assembly, contig: ERS368492SCcontig000028, whole genome shotgun sequence

⇒Summary: seq-len = 15192 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2563-3251 bp Zoom in on locus 1 x11 CRISPR array Location: 2563-3251 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 2563-3251 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2563-3251 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUUE01000002.1 Clostridioides difficile strain CD47 genome assembly, contig: ERS368492SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 567516 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 274323-275928 bp 2 Locus 2: 294370-294465 bp 3 Locus 3: 367745-375610 bp 4 Locus 4: 538030-538456 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 Zoom in on locus 3 Zoom in on locus 4 x7 CRISPR array Location: 274323-275928 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 274323-275928 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 294370-294465 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 294370-294465 bp Num of repeats: 2 Spacers: s25-s25 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 367745-368854 bp Gene: pfam01881:cas6 Type: other Location: 369112-369849 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 369854-371329 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 371349-372362 bp Gene: cd09693:cas5 Type: Type-I Location: 372378-373175 bp Gene: cd09641:cas3HD Type: Type-I Location: 373202-375610 bp CRISPR array Location: 538030-538456 bp Num of repeats: 7 Spacers: s26-s31 CRISPR array Location: 538030-538456 bp Num of repeats: 7 Spacers: s26-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 274323-275928 bp]: array | spacers
           [Locus range 294370-294465 bp]: array | spacers
           [Locus range 538030-538456 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUUE01000005.1 Clostridioides difficile strain CD47 genome assembly, contig: ERS368492SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 296485 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56714-58125 bp 2 Locus 2: 196363-196523 bp 3 Locus 3: 277739-278361 bp Zoom in on locus 1 x22 Zoom in on locus 2 x3 Zoom in on locus 3 x10 CRISPR array Location: 56714-58125 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 56714-58125 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 196363-196523 bp Num of repeats: 3 Spacers: s22-s23 CRISPR array Location: 196363-196523 bp Num of repeats: 3 Spacers: s22-s23 CRISPR array Location: 277739-278361 bp Num of repeats: 10 Spacers: s24-s32 CRISPR array Location: 277739-278361 bp Num of repeats: 10 Spacers: s24-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56714-58125 bp]: array | spacers
           [Locus range 196363-196523 bp]: array | spacers
           [Locus range 277739-278361 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUUE01000008.1 Clostridioides difficile strain CD47 genome assembly, contig: ERS368492SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 213412 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 118659-119083 bp Zoom in on locus 1 x7 CRISPR array Location: 118659-119083 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 118659-119083 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 118659-119083 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FUUE01000006.1 Clostridioides difficile strain CD47 genome assembly, contig: ERS368492SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 261037 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 228839-229067 bp Zoom in on locus 1 x4 CRISPR array Location: 228839-229067 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 228839-229067 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 228839-229067 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: FUUE01000037.1 Clostridioides difficile strain CD47 genome assembly, contig: ERS368492SCcontig000037, whole genome shotgun sequence

⇒Summary: seq-len = 4528 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2822-3311 bp Zoom in on locus 1 x8 CRISPR array Location: 2822-3311 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2822-3311 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2822-3311 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)