CRISPRone

CRISPRone report for GCA_900166395.1_11670_1_37

♦ Seq 1: FUUH01000020.1 Clostridioides difficile strain CD35 genome assembly, contig: ERS368480SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 11405 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6696-6925 bp Zoom in on locus 1 x4 CRISPR array Location: 6696-6925 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 6696-6925 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6696-6925 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUUH01000014.1 Clostridioides difficile strain CD35 genome assembly, contig: ERS368480SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 97588 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78706-79000 bp Zoom in on locus 1 x5 CRISPR array Location: 78706-79000 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 78706-79000 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78706-79000 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUUH01000001.1 Clostridioides difficile strain CD35 genome assembly, contig: ERS368480SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1269951 bp; # of CRISPR array = 3; # of cas gene = 11  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 50078-56610 bp 2 Locus 2: 764147-764902 bp 3 Locus 3: 838185-846503 bp 4 Locus 4: 1011904-1013187 bp Zoom in on locus 1 x10 Zoom in on locus 2 x12 Zoom in on locus 3 Zoom in on locus 4 x20 Gene: cd09693:cas5 Type: Type-I Location: 50078-50725 bp Gene: pfam01881:cas6 Type: other Location: 50716-51480 bp Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 51482-52648 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 52669-53739 bp Gene: COG1203:cas3 Type: Type-I Location: 53750-55735 bp CRISPR array Location: 55988-56610 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 55988-56610 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 764147-764902 bp Num of repeats: 12 Spacers: s10-s20 CRISPR array Location: 764147-764902 bp Num of repeats: 12 Spacers: s10-s20 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 838185-839294 bp Gene: unk Type: unknown Location: 839728-839904 bp Gene: pfam01881:cas6 Type: other Location: 840005-840742 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 840747-842222 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 842242-843255 bp Gene: cd09693:cas5 Type: Type-I Location: 843271-844068 bp Gene: cd09641:cas3HD Type: Type-I Location: 844095-846503 bp CRISPR array Location: 1011904-1013187 bp Num of repeats: 20 Spacers: s21-s39 CRISPR array Location: 1011904-1013187 bp Num of repeats: 20 Spacers: s21-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 55988-56610 bp]: array | spacers
           [Locus range 764147-764902 bp]: array | spacers
           [Locus range 1011904-1013187 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUUH01000007.1 Clostridioides difficile strain CD35 genome assembly, contig: ERS368480SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 211488 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90946-92493 bp Zoom in on locus 1 x24 CRISPR array Location: 90946-92493 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 90946-92493 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90946-92493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUUH01000008.1 Clostridioides difficile strain CD35 genome assembly, contig: ERS368480SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 193402 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56634-58981 bp Zoom in on locus 1 x36 CRISPR array Location: 56634-58981 bp Num of repeats: 36 Spacers: s1-s35 CRISPR array Location: 56634-58981 bp Num of repeats: 36 Spacers: s1-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56634-58981 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)