CRISPRone

CRISPRone report for GCA_900166415.1_11670_1_51

♦ Seq 1: FUUN01000008.1 Clostridioides difficile strain CD48 genome assembly, contig: ERS368493SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 215971 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123500-124059 bp Zoom in on locus 1 x9 CRISPR array Location: 123500-124059 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 123500-124059 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 123500-124059 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUUN01000024.1 Clostridioides difficile strain CD48 genome assembly, contig: ERS368493SCcontig000024, whole genome shotgun sequence

⇒Summary: seq-len = 18343 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6732-11268 bp Zoom in on locus 1 x6 x3 x10 CRISPR array Location: 6732-7091 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 6732-7091 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 8695-8853 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 8695-8853 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 10646-11268 bp Num of repeats: 10 Spacers: s8-s16 CRISPR array Location: 10646-11268 bp Num of repeats: 10 Spacers: s8-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6732-7091 bp]: array | spacers
           [Locus range 8695-8853 bp]: array | spacers
           [Locus range 10646-11268 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUUN01000022.1 Clostridioides difficile strain CD48 genome assembly, contig: ERS368493SCcontig000022, whole genome shotgun sequence

⇒Summary: seq-len = 68542 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3842-4926 bp Zoom in on locus 1 x17 CRISPR array Location: 3842-4926 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 3842-4926 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3842-4926 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUUN01000002.1 Clostridioides difficile strain CD48 genome assembly, contig: ERS368493SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 370514 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80526-81142 bp 2 Locus 2: 244414-252735 bp 3 Locus 3: 326018-326375 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 80526-81142 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 80526-81142 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 244414-246822 bp Gene: cd09693:cas5 Type: Type-I Location: 246849-247646 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 247662-248678 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 248698-250173 bp Gene: pfam01881:cas6 Type: other Location: 250178-250915 bp Gene: unk Type: unknown Location: 251016-251192 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 251626-252735 bp CRISPR array Location: 326018-326375 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 326018-326375 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 80526-81142 bp]: array | spacers
           [Locus range 326018-326375 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUUN01000004.1 Clostridioides difficile strain CD48 genome assembly, contig: ERS368493SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 312960 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44607-44701 bp 2 Locus 2: 266895-277680 bp Zoom in on locus 1 x2 Zoom in on locus 2 x20 CRISPR array Location: 44607-44701 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44607-44701 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 266895-267782 bp Gene: pfam01881:cas6 Type: other Location: 267860-268597 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 268603-270453 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270455-271369 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271371-272072 bp Gene: COG1203:cas3 Type: Type-I Location: 272083-274404 bp Gene: pfam01930:cas4 Type: Type-I Location: 274419-274970 bp Gene: cd09722:cas1 Type: universal Location: 274973-275953 bp Gene: cd09725:cas2 Type: universal Location: 275956-276222 bp CRISPR array Location: 276406-277680 bp Num of repeats: 20 Spacers: s2-s20 CRISPR array Location: 276406-277680 bp Num of repeats: 20 Spacers: s2-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44607-44701 bp]: array | spacers
           [Locus range 276406-277680 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUUN01000020.1 Clostridioides difficile strain CD48 genome assembly, contig: ERS368493SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 96674 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77979-78735 bp Zoom in on locus 1 x12 CRISPR array Location: 77979-78735 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 77979-78735 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 77979-78735 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUUN01000001.1 Clostridioides difficile strain CD48 genome assembly, contig: ERS368493SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 463083 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 300166-300327 bp Zoom in on locus 1 x3 CRISPR array Location: 300166-300327 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 300166-300327 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 300166-300327 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)