CRISPRone

CRISPRone report for GCA_900166425.1_11670_1_62

♦ Seq 1: FUUI01000020.1 Clostridioides difficile strain CD59 genome assembly, contig: ERS368504SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 39963 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15986-21243 bp Zoom in on locus 1 x11 x4 x15 CRISPR array Location: 15986-16671 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 15986-16671 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 18374-18599 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 18374-18599 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 20293-21243 bp Num of repeats: 15 Spacers: s14-s27 CRISPR array Location: 20293-21243 bp Num of repeats: 15 Spacers: s14-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15986-16671 bp]: array | spacers
           [Locus range 18374-18599 bp]: array | spacers
           [Locus range 20293-21243 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUUI01000001.1 Clostridioides difficile strain CD59 genome assembly, contig: ERS368504SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1116989 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244352-244848 bp 2 Locus 2: 318130-326476 bp 3 Locus 3: 489896-490644 bp 4 Locus 4: 863404-863695 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x5 CRISPR array Location: 244352-244848 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 244352-244848 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318130-319239 bp Gene: unk Type: unknown Location: 319698-319874 bp Gene: pfam01881:cas6 Type: other Location: 319975-320712 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320717-322192 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322212-323228 bp Gene: cd09693:cas5 Type: Type-I Location: 323244-324041 bp Gene: cd09641:cas3HD Type: Type-I Location: 324068-326476 bp CRISPR array Location: 489896-490644 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 489896-490644 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 863404-863695 bp Num of repeats: 5 Spacers: s19-s22 CRISPR array Location: 863404-863695 bp Num of repeats: 5 Spacers: s19-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244352-244848 bp]: array | spacers
           [Locus range 489896-490644 bp]: array | spacers
           [Locus range 863404-863695 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUUI01000006.1 Clostridioides difficile strain CD59 genome assembly, contig: ERS368504SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 210950 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90876-91633 bp Zoom in on locus 1 x12 CRISPR array Location: 90876-91633 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 90876-91633 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90876-91633 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUUI01000004.1 Clostridioides difficile strain CD59 genome assembly, contig: ERS368504SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 301029 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18206-20015 bp 2 Locus 2: 100626-100916 bp 3 Locus 3: 236050-237385 bp Zoom in on locus 1 x28 Zoom in on locus 2 x5 Zoom in on locus 3 x21 CRISPR array Location: 18206-20015 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 18206-20015 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 100626-100916 bp Num of repeats: 5 Spacers: s28-s31 CRISPR array Location: 100626-100916 bp Num of repeats: 5 Spacers: s28-s31 CRISPR array Location: 236050-237385 bp Num of repeats: 21 Spacers: s32-s51 CRISPR array Location: 236050-237385 bp Num of repeats: 21 Spacers: s32-s51 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18206-20015 bp]: array | spacers
           [Locus range 100626-100916 bp]: array | spacers
           [Locus range 236050-237385 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUUI01000002.1 Clostridioides difficile strain CD59 genome assembly, contig: ERS368504SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 476306 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 191184-201080 bp Zoom in on locus 1 x6 Gene: pfam13280:WYL Type: other Location: 191184-192071 bp Gene: pfam01881:cas6 Type: other Location: 192149-192886 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 192892-194769 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 194771-195685 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 195687-196388 bp Gene: cd09641:cas3HD Type: Type-I Location: 196399-198720 bp Gene: pfam01930:cas4 Type: Type-I Location: 198735-199286 bp Gene: cd09722:cas1 Type: universal Location: 199289-200269 bp Gene: cd09725:cas2 Type: universal Location: 200272-200538 bp CRISPR array Location: 200722-201080 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 200722-201080 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 200722-201080 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)