CRISPRone

CRISPRone report for GCA_900166435.1_11670_1_39

♦ Seq 1: FUUL01000011.1 Clostridioides difficile strain CD37 genome assembly, contig: ERS368482SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 190529 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18167-18924 bp Zoom in on locus 1 x12 CRISPR array Location: 18167-18924 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 18167-18924 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18167-18924 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUUL01000002.1 Clostridioides difficile strain CD37 genome assembly, contig: ERS368482SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 370809 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44385-44743 bp 2 Locus 2: 118025-126346 bp 3 Locus 3: 289662-290279 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44385-44743 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44385-44743 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 118025-119134 bp Gene: unk Type: unknown Location: 119568-119744 bp Gene: pfam01881:cas6 Type: other Location: 119845-120582 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120587-122062 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122082-123098 bp Gene: cd09693:cas5 Type: Type-I Location: 123114-123911 bp Gene: cd09641:cas3HD Type: Type-I Location: 123938-126346 bp CRISPR array Location: 289662-290279 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289662-290279 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44385-44743 bp]: array | spacers
           [Locus range 289662-290279 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUUL01000007.1 Clostridioides difficile strain CD37 genome assembly, contig: ERS368482SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 216263 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124655-125214 bp Zoom in on locus 1 x9 CRISPR array Location: 124655-125214 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 124655-125214 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124655-125214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUUL01000003.1 Clostridioides difficile strain CD37 genome assembly, contig: ERS368482SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 336391 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 247770-248919 bp Zoom in on locus 1 x18 CRISPR array Location: 247770-248919 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 247770-248919 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 247770-248919 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUUL01000001.1 Clostridioides difficile strain CD37 genome assembly, contig: ERS368482SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 530991 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252651-263788 bp 2 Locus 2: 486067-486160 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 252651-254250 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 252651-254250 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 254434-254700 bp Gene: cd09722:cas1 Type: universal Location: 254703-255683 bp Gene: pfam01930:cas4 Type: Type-I Location: 255686-256204 bp Gene: COG1203:cas3 Type: Type-I Location: 256252-258573 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258584-259285 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259287-260201 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260203-262053 bp Gene: pfam01881:cas6 Type: other Location: 262059-262853 bp Gene: pfam13280:WYL Type: other Location: 262874-263788 bp CRISPR array Location: 486067-486160 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 486067-486160 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252651-254250 bp]: array | spacers
           [Locus range 486067-486160 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUUL01000009.1 Clostridioides difficile strain CD37 genome assembly, contig: ERS368482SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 202265 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91811-91972 bp Zoom in on locus 1 x3 CRISPR array Location: 91811-91972 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 91811-91972 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91811-91972 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUUL01000018.1 Clostridioides difficile strain CD37 genome assembly, contig: ERS368482SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 68312 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63677-64826 bp Zoom in on locus 1 x18 CRISPR array Location: 63677-64826 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63677-64826 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63677-64826 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)