CRISPRone

CRISPRone report for GCA_900166445.1_11670_1_12

♦ Seq 1: FUUK01000011.1 Clostridioides difficile strain CD11 genome assembly, contig: ERS368456SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 138328 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80530-81277 bp Zoom in on locus 1 x12 CRISPR array Location: 80530-81277 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 80530-81277 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 80530-81277 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUUK01000018.1 Clostridioides difficile strain CD11 genome assembly, contig: ERS368456SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 68358 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63672-64886 bp Zoom in on locus 1 x19 CRISPR array Location: 63672-64886 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 63672-64886 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63672-64886 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUUK01000004.1 Clostridioides difficile strain CD11 genome assembly, contig: ERS368456SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 290338 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44385-44873 bp 2 Locus 2: 118155-126476 bp Zoom in on locus 1 x8 Zoom in on locus 2 CRISPR array Location: 44385-44873 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 44385-44873 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 118155-119264 bp Gene: unk Type: unknown Location: 119698-119874 bp Gene: pfam01881:cas6 Type: other Location: 119975-120712 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120717-122192 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122212-123228 bp Gene: cd09693:cas5 Type: Type-I Location: 123244-124041 bp Gene: cd09641:cas3HD Type: Type-I Location: 124068-126476 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44385-44873 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUUK01000007.1 Clostridioides difficile strain CD11 genome assembly, contig: ERS368456SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 215904 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124574-124934 bp Zoom in on locus 1 x6 CRISPR array Location: 124574-124934 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 124574-124934 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124574-124934 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUUK01000002.1 Clostridioides difficile strain CD11 genome assembly, contig: ERS368456SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 507474 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21082-21176 bp 2 Locus 2: 243636-254813 bp Zoom in on locus 1 x2 Zoom in on locus 2 x26 CRISPR array Location: 21082-21176 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 21082-21176 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 243636-244523 bp Gene: pfam01881:cas6 Type: other Location: 244601-245338 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 245344-247194 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 247196-248110 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 248112-248813 bp Gene: COG1203:cas3 Type: Type-I Location: 248824-251145 bp Gene: pfam01930:cas4 Type: Type-I Location: 251160-251711 bp Gene: cd09722:cas1 Type: universal Location: 251714-252694 bp Gene: cd09725:cas2 Type: universal Location: 252697-252963 bp CRISPR array Location: 253147-254813 bp Num of repeats: 26 Spacers: s2-s26 CRISPR array Location: 253147-254813 bp Num of repeats: 26 Spacers: s2-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21082-21176 bp]: array | spacers
           [Locus range 253147-254813 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUUK01000003.1 Clostridioides difficile strain CD11 genome assembly, contig: ERS368456SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 401842 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 291422-291583 bp Zoom in on locus 1 x3 CRISPR array Location: 291422-291583 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 291422-291583 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 291422-291583 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUUK01000009.1 Clostridioides difficile strain CD11 genome assembly, contig: ERS368456SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 190210 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17949-18707 bp Zoom in on locus 1 x12 CRISPR array Location: 17949-18707 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 17949-18707 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17949-18707 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FUUK01000023.1 Clostridioides difficile strain CD11 genome assembly, contig: ERS368456SCcontig000023, whole genome shotgun sequence

⇒Summary: seq-len = 14551 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8803-9886 bp Zoom in on locus 1 x17 CRISPR array Location: 8803-9886 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 8803-9886 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8803-9886 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)