CRISPRone

CRISPRone report for GCA_900166455.1_11670_1_60

♦ Seq 1: FUUM01000006.1 Clostridioides difficile strain CD57 genome assembly, contig: ERS368502SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 217573 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125222-126046 bp Zoom in on locus 1 x13 CRISPR array Location: 125222-126046 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 125222-126046 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 125222-126046 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUUM01000008.1 Clostridioides difficile strain CD57 genome assembly, contig: ERS368502SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 154292 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11766-12716 bp Zoom in on locus 1 x15 CRISPR array Location: 11766-12716 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 11766-12716 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11766-12716 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUUM01000002.1 Clostridioides difficile strain CD57 genome assembly, contig: ERS368502SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 476427 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 275337-285259 bp Zoom in on locus 1 x6 CRISPR array Location: 275337-275694 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 275337-275694 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09725:cas2 Type: universal Location: 275878-276144 bp Gene: cd09722:cas1 Type: universal Location: 276147-277127 bp Gene: pfam01930:cas4 Type: Type-I Location: 277130-277648 bp Gene: cd09641:cas3HD Type: Type-I Location: 277696-280017 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 280028-280729 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 280731-281645 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 281647-283524 bp Gene: pfam01881:cas6 Type: other Location: 283530-284324 bp Gene: pfam13280:WYL Type: other Location: 284345-285259 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 275337-275694 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUUM01000004.1 Clostridioides difficile strain CD57 genome assembly, contig: ERS368502SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 300939 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18206-19884 bp 2 Locus 2: 100495-100785 bp 3 Locus 3: 235960-237295 bp Zoom in on locus 1 x26 Zoom in on locus 2 x5 Zoom in on locus 3 x21 CRISPR array Location: 18206-19884 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 18206-19884 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 100495-100785 bp Num of repeats: 5 Spacers: s26-s29 CRISPR array Location: 100495-100785 bp Num of repeats: 5 Spacers: s26-s29 CRISPR array Location: 235960-237295 bp Num of repeats: 21 Spacers: s30-s49 CRISPR array Location: 235960-237295 bp Num of repeats: 21 Spacers: s30-s49 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18206-19884 bp]: array | spacers
           [Locus range 100495-100785 bp]: array | spacers
           [Locus range 235960-237295 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUUM01000001.1 Clostridioides difficile strain CD57 genome assembly, contig: ERS368502SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1114942 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 242186-242682 bp 2 Locus 2: 315964-324310 bp 3 Locus 3: 487730-488478 bp 4 Locus 4: 861307-861598 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x5 CRISPR array Location: 242186-242682 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 242186-242682 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 315964-317073 bp Gene: unk Type: unknown Location: 317532-317708 bp Gene: pfam01881:cas6 Type: other Location: 317809-318546 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 318551-320026 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 320046-321062 bp Gene: cd09693:cas5 Type: Type-I Location: 321078-321875 bp Gene: cd09641:cas3HD Type: Type-I Location: 321902-324310 bp CRISPR array Location: 487730-488478 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 487730-488478 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 861307-861598 bp Num of repeats: 5 Spacers: s19-s22 CRISPR array Location: 861307-861598 bp Num of repeats: 5 Spacers: s19-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 242186-242682 bp]: array | spacers
           [Locus range 487730-488478 bp]: array | spacers
           [Locus range 861307-861598 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)