CRISPRone

CRISPRone report for GCA_900166475.1_11670_1_13

♦ Seq 1: FUUO01000002.1 Clostridioides difficile strain CD12 genome assembly, contig: ERS368457SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 821395 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 556120-567421 bp Zoom in on locus 1 x27 Gene: pfam13280:WYL Type: other Location: 556120-557034 bp Gene: pfam01881:cas6 Type: other Location: 557055-557849 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 557855-559732 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 559734-560648 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 560650-561351 bp Gene: COG1203:cas3 Type: Type-I Location: 561362-563683 bp Gene: pfam01930:cas4 Type: Type-I Location: 563698-564249 bp Gene: cd09722:cas1 Type: universal Location: 564252-565232 bp Gene: cd09725:cas2 Type: universal Location: 565235-565501 bp CRISPR array Location: 565685-567421 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 565685-567421 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 565685-567421 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUUO01000006.1 Clostridioides difficile strain CD12 genome assembly, contig: ERS368457SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 155765 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19167-20257 bp Zoom in on locus 1 x17 CRISPR array Location: 19167-20257 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 19167-20257 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19167-20257 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUUO01000003.1 Clostridioides difficile strain CD12 genome assembly, contig: ERS368457SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 490389 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190270-190629 bp 2 Locus 2: 398743-399302 bp Zoom in on locus 1 x6 Zoom in on locus 2 x9 CRISPR array Location: 190270-190629 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 190270-190629 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 398743-399302 bp Num of repeats: 9 Spacers: s6-s13 CRISPR array Location: 398743-399302 bp Num of repeats: 9 Spacers: s6-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190270-190629 bp]: array | spacers
           [Locus range 398743-399302 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUUO01000001.1 Clostridioides difficile strain CD12 genome assembly, contig: ERS368457SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1376577 bp; # of CRISPR array = 5; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 166584-167800 bp 2 Locus 2: 485669-485828 bp 3 Locus 3: 536741-538147 bp 4 Locus 4: 887183-888197 bp 5 Locus 5: 1050186-1058051 bp 6 Locus 6: 1131319-1131876 bp Zoom in on locus 1 x19 Zoom in on locus 2 x3 Zoom in on locus 3 x22 Zoom in on locus 4 x16 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 166584-167800 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 166584-167800 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 485669-485828 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 485669-485828 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 536741-538147 bp Num of repeats: 22 Spacers: s21-s41 CRISPR array Location: 536741-538147 bp Num of repeats: 22 Spacers: s21-s41 CRISPR array Location: 887183-888197 bp Num of repeats: 16 Spacers: s42-s56 CRISPR array Location: 887183-888197 bp Num of repeats: 16 Spacers: s42-s56 Gene: cd09641:cas3HD Type: Type-I Location: 1050186-1052594 bp Gene: cd09693:cas5 Type: Type-I Location: 1052621-1053418 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1053434-1054447 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1054467-1055942 bp Gene: pfam01881:cas6 Type: other Location: 1055947-1056684 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1056942-1058051 bp CRISPR array Location: 1131319-1131876 bp Num of repeats: 9 Spacers: s57-s64 CRISPR array Location: 1131319-1131876 bp Num of repeats: 9 Spacers: s57-s64 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 166584-167800 bp]: array | spacers
           [Locus range 485669-485828 bp]: array | spacers
           [Locus range 536741-538147 bp]: array | spacers
           [Locus range 887183-888197 bp]: array | spacers
           [Locus range 1131319-1131876 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)