CRISPRone

CRISPRone report for GCA_900166485.1_11670_1_49

♦ Seq 1: FUUP01000001.1 Clostridioides difficile strain CD46 genome assembly, contig: ERS368491SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1376502 bp; # of CRISPR array = 5; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 166537-167753 bp 2 Locus 2: 485697-485856 bp 3 Locus 3: 536769-538175 bp 4 Locus 4: 887118-888132 bp 5 Locus 5: 1050112-1057977 bp 6 Locus 6: 1131245-1131802 bp Zoom in on locus 1 x19 Zoom in on locus 2 x3 Zoom in on locus 3 x22 Zoom in on locus 4 x16 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 166537-167753 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 166537-167753 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 485697-485856 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 485697-485856 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 536769-538175 bp Num of repeats: 22 Spacers: s21-s41 CRISPR array Location: 536769-538175 bp Num of repeats: 22 Spacers: s21-s41 CRISPR array Location: 887118-888132 bp Num of repeats: 16 Spacers: s42-s56 CRISPR array Location: 887118-888132 bp Num of repeats: 16 Spacers: s42-s56 Gene: cd09641:cas3HD Type: Type-I Location: 1050112-1052520 bp Gene: cd09693:cas5 Type: Type-I Location: 1052547-1053344 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1053360-1054373 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1054393-1055868 bp Gene: pfam01881:cas6 Type: other Location: 1055873-1056610 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1056868-1057977 bp CRISPR array Location: 1131245-1131802 bp Num of repeats: 9 Spacers: s57-s64 CRISPR array Location: 1131245-1131802 bp Num of repeats: 9 Spacers: s57-s64 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 166537-167753 bp]: array | spacers
           [Locus range 485697-485856 bp]: array | spacers
           [Locus range 536769-538175 bp]: array | spacers
           [Locus range 887118-888132 bp]: array | spacers
           [Locus range 1131245-1131802 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUUP01000014.1 Clostridioides difficile strain CD46 genome assembly, contig: ERS368491SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 14328 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5144-5503 bp Zoom in on locus 1 x6 CRISPR array Location: 5144-5503 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5144-5503 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5144-5503 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUUP01000006.1 Clostridioides difficile strain CD46 genome assembly, contig: ERS368491SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 155902 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19033-20123 bp Zoom in on locus 1 x17 CRISPR array Location: 19033-20123 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 19033-20123 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19033-20123 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUUP01000002.1 Clostridioides difficile strain CD46 genome assembly, contig: ERS368491SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 821490 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 556196-567497 bp Zoom in on locus 1 x27 Gene: pfam13280:WYL Type: other Location: 556196-557110 bp Gene: pfam01881:cas6 Type: other Location: 557131-557925 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 557931-559808 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 559810-560724 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 560726-561427 bp Gene: COG1203:cas3 Type: Type-I Location: 561438-563759 bp Gene: pfam01930:cas4 Type: Type-I Location: 563774-564325 bp Gene: cd09722:cas1 Type: universal Location: 564328-565308 bp Gene: cd09725:cas2 Type: universal Location: 565311-565577 bp CRISPR array Location: 565761-567497 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 565761-567497 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 565761-567497 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUUP01000003.1 Clostridioides difficile strain CD46 genome assembly, contig: ERS368491SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 475994 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90892-91450 bp Zoom in on locus 1 x9 CRISPR array Location: 90892-91450 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 90892-91450 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90892-91450 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)