CRISPRone

CRISPRone report for GCA_900166545.1_11670_1_35

♦ Seq 1: FUUV01000001.1 Clostridioides difficile strain CD33 genome assembly, contig: ERS368478SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1286730 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 401594-402157 bp 2 Locus 2: 475439-483785 bp 3 Locus 3: 647204-647887 bp 4 Locus 4: 1057344-1057635 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x11 Zoom in on locus 4 x5 CRISPR array Location: 401594-402157 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 401594-402157 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 475439-476548 bp Gene: unk Type: unknown Location: 477007-477183 bp Gene: pfam01881:cas6 Type: other Location: 477284-478021 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 478026-479501 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 479521-480537 bp Gene: cd09693:cas5 Type: Type-I Location: 480553-481350 bp Gene: cd09641:cas3HD Type: Type-I Location: 481377-483785 bp CRISPR array Location: 647204-647887 bp Num of repeats: 11 Spacers: s9-s18 CRISPR array Location: 647204-647887 bp Num of repeats: 11 Spacers: s9-s18 CRISPR array Location: 1057344-1057635 bp Num of repeats: 5 Spacers: s19-s22 CRISPR array Location: 1057344-1057635 bp Num of repeats: 5 Spacers: s19-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 401594-402157 bp]: array | spacers
           [Locus range 647204-647887 bp]: array | spacers
           [Locus range 1057344-1057635 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUUV01000008.1 Clostridioides difficile strain CD33 genome assembly, contig: ERS368478SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 213098 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 118203-118894 bp 2 Locus 2: 167318-176168 bp Zoom in on locus 1 x11 Zoom in on locus 2 CRISPR array Location: 118203-118894 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 118203-118894 bp Num of repeats: 11 Spacers: s1-s10 Gene: mkCas0115:csx3 Type: other Location: 167318-167995 bp Gene: unk Type: unknown Location: 167996-170557 bp Gene: cls001593:casR Type: Type-I Location: 170778-172052 bp Gene: unk Type: unknown Location: 172213-174231 bp Gene: pfam00078:RT Type: other Location: 174327-176168 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 118203-118894 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUUV01000002.1 Clostridioides difficile strain CD33 genome assembly, contig: ERS368478SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 509252 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 285493-288393 bp 2 Locus 2: 310718-311272 bp Zoom in on locus 1 x2 x4 x13 Zoom in on locus 2 x9 CRISPR array Location: 285493-285587 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 285493-285587 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 285732-285957 bp Num of repeats: 4 Spacers: s2-s4 CRISPR array Location: 285732-285957 bp Num of repeats: 4 Spacers: s2-s4 CRISPR array Location: 287573-288393 bp Num of repeats: 13 Spacers: s5-s16 CRISPR array Location: 287573-288393 bp Num of repeats: 13 Spacers: s5-s16 CRISPR array Location: 310718-311272 bp Num of repeats: 9 Spacers: s17-s24 CRISPR array Location: 310718-311272 bp Num of repeats: 9 Spacers: s17-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 285493-285587 bp]: array | spacers
           [Locus range 285732-285957 bp]: array | spacers
           [Locus range 287573-288393 bp]: array | spacers
           [Locus range 310718-311272 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUUV01000003.1 Clostridioides difficile strain CD33 genome assembly, contig: ERS368478SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 476317 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 191135-201096 bp Zoom in on locus 1 x7 Gene: pfam13280:WYL Type: other Location: 191135-192022 bp Gene: pfam01881:cas6 Type: other Location: 192100-192837 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 192843-194720 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 194722-195636 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 195638-196339 bp Gene: cd09641:cas3HD Type: Type-I Location: 196350-198671 bp Gene: pfam01930:cas4 Type: Type-I Location: 198686-199237 bp Gene: cd09722:cas1 Type: universal Location: 199240-200220 bp Gene: cd09725:cas2 Type: universal Location: 200223-200489 bp CRISPR array Location: 200673-201096 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 200673-201096 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 200673-201096 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUUV01000017.1 Clostridioides difficile strain CD33 genome assembly, contig: ERS368478SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 30319 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10662-10757 bp Zoom in on locus 1 x2 CRISPR array Location: 10662-10757 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 10662-10757 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10662-10757 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUUV01000006.1 Clostridioides difficile strain CD33 genome assembly, contig: ERS368478SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 258437 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18127-19872 bp 2 Locus 2: 193456-194793 bp Zoom in on locus 1 x27 Zoom in on locus 2 x21 CRISPR array Location: 18127-19872 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 18127-19872 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 193456-194793 bp Num of repeats: 21 Spacers: s27-s46 CRISPR array Location: 193456-194793 bp Num of repeats: 21 Spacers: s27-s46 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18127-19872 bp]: array | spacers
           [Locus range 193456-194793 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)