CRISPRone

CRISPRone report for GCA_900166555.1_11670_1_3

♦ Seq 1: FUUW01000001.1 Clostridioides difficile strain CD03 genome assembly, contig: ERS368448SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 330941 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 227269-239579 bp 2 Locus 2: 277082-277895 bp Zoom in on locus 1 x44 Zoom in on locus 2 x13 CRISPR array Location: 227269-230133 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 227269-230133 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 237535-239190 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 239202-239579 bp CRISPR array Location: 277082-277895 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 277082-277895 bp Num of repeats: 13 Spacers: s44-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 227269-230133 bp]: array | spacers
           [Locus range 277082-277895 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUUW01000037.1 Clostridioides difficile strain CD03 genome assembly, contig: ERS368448SCcontig000037, whole genome shotgun sequence

⇒Summary: seq-len = 10217 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4531-5158 bp Zoom in on locus 1 x10 CRISPR array Location: 4531-5158 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 4531-5158 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4531-5158 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUUW01000004.1 Clostridioides difficile strain CD03 genome assembly, contig: ERS368448SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 258581 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88687-97014 bp 2 Locus 2: 149617-160570 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88687-89796 bp Gene: unk Type: unknown Location: 90249-90425 bp Gene: pfam01881:cas6 Type: other Location: 90526-91263 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91268-92734 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92753-93766 bp Gene: cd09693:cas5 Type: Type-I Location: 93782-94579 bp Gene: cd09641:cas3HD Type: Type-I Location: 94606-97014 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149617-150102 bp Gene: cd06127:DEDDh Type: Type-I Location: 156917-157954 bp Gene: unk Type: unknown Location: 158318-158824 bp Gene: unk Type: unknown Location: 159237-159905 bp Gene: cd06127:DEDDh Type: Type-I Location: 160064-160570 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUUW01000011.1 Clostridioides difficile strain CD03 genome assembly, contig: ERS368448SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 140802 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61741-73394 bp Zoom in on locus 1 x40 Gene: cd09725:cas2 Type: universal Location: 61741-62031 bp Gene: cd09722:cas1 Type: universal Location: 62242-63249 bp Gene: pfam01930:cas4 Type: Type-I Location: 63275-63769 bp CRISPR array Location: 63854-66452 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 63854-66452 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 64477-64605 bp Gene: cd09641:cas3HD Type: Type-I Location: 66642-69200 bp Gene: cd09693:cas5 Type: Type-I Location: 69224-69964 bp Gene: pfam05107:cas7b Type: Type-I Location: 69966-70955 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70948-72687 bp Gene: cd09652:cas6 Type: other Location: 72699-73394 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63854-66452 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUUW01000020.1 Clostridioides difficile strain CD03 genome assembly, contig: ERS368448SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 76040 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1602-2751 bp Zoom in on locus 1 x18 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1602-2751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUUW01000009.1 Clostridioides difficile strain CD03 genome assembly, contig: ERS368448SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 147309 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125789-137487 bp Zoom in on locus 1 x33 CRISPR array Location: 125789-127910 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125789-127910 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128094-128360 bp Gene: cd09722:cas1 Type: universal Location: 128363-129343 bp Gene: pfam01930:cas4 Type: Type-I Location: 129346-129864 bp Gene: COG1203:cas3 Type: Type-I Location: 129912-132233 bp Gene: cd09693:cas5 Type: Type-I Location: 132244-132945 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132947-133861 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133863-135713 bp Gene: pfam01881:cas6 Type: other Location: 135719-136456 bp Gene: pfam13280:WYL Type: other Location: 136534-137487 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125789-127910 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)