CRISPRone

CRISPRone report for GCA_900166565.1_11670_1_64

♦ Seq 1: FUUX01000005.1 Clostridioides difficile strain CD61 genome assembly, contig: ERS368506SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 290340 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 163865-172186 bp 2 Locus 2: 245469-245956 bp Zoom in on locus 1 Zoom in on locus 2 x8 Gene: cd09641:cas3HD Type: Type-I Location: 163865-166273 bp Gene: cd09693:cas5 Type: Type-I Location: 166300-167097 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 167113-168129 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 168149-169624 bp Gene: pfam01881:cas6 Type: other Location: 169629-170366 bp Gene: unk Type: unknown Location: 170467-170643 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 171077-172186 bp CRISPR array Location: 245469-245956 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 245469-245956 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 245469-245956 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUUX01000018.1 Clostridioides difficile strain CD61 genome assembly, contig: ERS368506SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 68304 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63618-64832 bp Zoom in on locus 1 x19 CRISPR array Location: 63618-64832 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 63618-64832 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63618-64832 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUUX01000001.1 Clostridioides difficile strain CD61 genome assembly, contig: ERS368506SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 507509 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252675-263878 bp 2 Locus 2: 486293-486386 bp Zoom in on locus 1 x26 Zoom in on locus 2 x2 CRISPR array Location: 252675-254340 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 252675-254340 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 254524-254790 bp Gene: cd09722:cas1 Type: universal Location: 254793-255773 bp Gene: pfam01930:cas4 Type: Type-I Location: 255776-256294 bp Gene: COG1203:cas3 Type: Type-I Location: 256342-258663 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258674-259375 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259377-260291 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260293-262143 bp Gene: pfam01881:cas6 Type: other Location: 262149-262943 bp Gene: pfam13280:WYL Type: other Location: 262964-263878 bp CRISPR array Location: 486293-486386 bp Num of repeats: 2 Spacers: s26-s26 CRISPR array Location: 486293-486386 bp Num of repeats: 2 Spacers: s26-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252675-254340 bp]: array | spacers
           [Locus range 486293-486386 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUUX01000010.1 Clostridioides difficile strain CD61 genome assembly, contig: ERS368506SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 190824 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 171660-172417 bp Zoom in on locus 1 x12 CRISPR array Location: 171660-172417 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 171660-172417 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 171660-172417 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUUX01000002.1 Clostridioides difficile strain CD61 genome assembly, contig: ERS368506SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 426033 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86131-87214 bp Zoom in on locus 1 x17 CRISPR array Location: 86131-87214 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 86131-87214 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86131-87214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUUX01000017.1 Clostridioides difficile strain CD61 genome assembly, contig: ERS368506SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 86413 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 81035-81782 bp Zoom in on locus 1 x12 CRISPR array Location: 81035-81782 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 81035-81782 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 81035-81782 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUUX01000008.1 Clostridioides difficile strain CD61 genome assembly, contig: ERS368506SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 216559 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91627-91986 bp Zoom in on locus 1 x6 CRISPR array Location: 91627-91986 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 91627-91986 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91627-91986 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FUUX01000003.1 Clostridioides difficile strain CD61 genome assembly, contig: ERS368506SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 406413 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110263-110423 bp Zoom in on locus 1 x3 CRISPR array Location: 110263-110423 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 110263-110423 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110263-110423 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)