CRISPRone

CRISPRone report for GCA_900167585.1_16852_2_94

♦ Seq 1: FUXO01000002.1 Clostridioides difficile strain VRECD0111 genome assembly, contig: ERS716987SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 644934 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135974-136200 bp 2 Locus 2: 246495-246915 bp 3 Locus 3: 455058-455350 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 Zoom in on locus 3 x5 CRISPR array Location: 135974-136200 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 135974-136200 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 246495-246915 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 246495-246915 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 455058-455350 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 455058-455350 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135974-136200 bp]: array | spacers
           [Locus range 246495-246915 bp]: array | spacers
           [Locus range 455058-455350 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUXO01000004.1 Clostridioides difficile strain VRECD0111 genome assembly, contig: ERS716987SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 546281 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 238920-242336 bp Zoom in on locus 1 x13 x5 CRISPR array Location: 238920-239742 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 238920-239742 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 242046-242336 bp Num of repeats: 5 Spacers: s13-s16 CRISPR array Location: 242046-242336 bp Num of repeats: 5 Spacers: s13-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 238920-239742 bp]: array | spacers
           [Locus range 242046-242336 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUXO01000001.1 Clostridioides difficile strain VRECD0111 genome assembly, contig: ERS716987SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1223031 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244706-245264 bp 2 Locus 2: 318511-326376 bp 3 Locus 3: 488338-489089 bp 4 Locus 4: 678591-690647 bp 5 Locus 5: 846102-846264 bp 6 Locus 6: 1155260-1155620 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x46 Zoom in on locus 5 x3 Zoom in on locus 6 x6 CRISPR array Location: 244706-245264 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244706-245264 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318511-319620 bp Gene: pfam01881:cas6 Type: other Location: 319878-320615 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320620-322095 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322115-323128 bp Gene: cd09693:cas5 Type: Type-I Location: 323144-323941 bp Gene: cd09641:cas3HD Type: Type-I Location: 323968-326376 bp CRISPR array Location: 488338-489089 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 488338-489089 bp Num of repeats: 12 Spacers: s9-s19 Gene: cd09652:cas6 Type: other Location: 678591-679286 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 679298-681037 bp Gene: pfam05107:cas7b Type: Type-I Location: 681030-682019 bp Gene: cd09693:cas5 Type: Type-I Location: 682021-682761 bp Gene: cd09641:cas3HD Type: Type-I Location: 682785-685343 bp CRISPR array Location: 685533-688535 bp Num of repeats: 46 Spacers: s20-s64 CRISPR array Location: 685533-688535 bp Num of repeats: 46 Spacers: s20-s64 Gene: pfam01930:cas4 Type: Type-I Location: 688619-689113 bp Gene: cd09722:cas1 Type: universal Location: 689139-690146 bp Gene: cd09725:cas2 Type: universal Location: 690357-690647 bp CRISPR array Location: 846102-846264 bp Num of repeats: 3 Spacers: s65-s66 CRISPR array Location: 846102-846264 bp Num of repeats: 3 Spacers: s65-s66 CRISPR array Location: 1155260-1155620 bp Num of repeats: 6 Spacers: s67-s71 CRISPR array Location: 1155260-1155620 bp Num of repeats: 6 Spacers: s67-s71 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244706-245264 bp]: array | spacers
           [Locus range 488338-489089 bp]: array | spacers
           [Locus range 685533-688535 bp]: array | spacers
           [Locus range 846102-846264 bp]: array | spacers
           [Locus range 1155260-1155620 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)