CRISPRone

CRISPRone report for GCA_900167625.1_16852_2_68

♦ Seq 1: FUXN01000008.1 Clostridioides difficile strain VRECD0076 genome assembly, contig: ERS716961SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 178658 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40351-42090 bp Zoom in on locus 1 x27 CRISPR array Location: 40351-42090 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 40351-42090 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 40351-42090 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUXN01000001.1 Clostridioides difficile strain VRECD0076 genome assembly, contig: ERS716961SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 604378 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 81002-81760 bp 2 Locus 2: 198110-198531 bp 3 Locus 3: 402294-402720 bp Zoom in on locus 1 x12 Zoom in on locus 2 x7 Zoom in on locus 3 x7 CRISPR array Location: 81002-81760 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 81002-81760 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 198110-198531 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 198110-198531 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 402294-402720 bp Num of repeats: 7 Spacers: s18-s23 CRISPR array Location: 402294-402720 bp Num of repeats: 7 Spacers: s18-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 81002-81760 bp]: array | spacers
           [Locus range 198110-198531 bp]: array | spacers
           [Locus range 402294-402720 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUXN01000002.1 Clostridioides difficile strain VRECD0076 genome assembly, contig: ERS716961SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 550982 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97852-98078 bp 2 Locus 2: 263835-271700 bp 3 Locus 3: 345921-346477 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 97852-98078 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 97852-98078 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09641:cas3HD Type: Type-I Location: 263835-266243 bp Gene: cd09693:cas5 Type: Type-I Location: 266270-267067 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 267083-268096 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 268116-269591 bp Gene: pfam01881:cas6 Type: other Location: 269596-270333 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 270591-271700 bp CRISPR array Location: 345921-346477 bp Num of repeats: 9 Spacers: s4-s11 CRISPR array Location: 345921-346477 bp Num of repeats: 9 Spacers: s4-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97852-98078 bp]: array | spacers
           [Locus range 345921-346477 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUXN01000005.1 Clostridioides difficile strain VRECD0076 genome assembly, contig: ERS716961SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 477349 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 243458-243684 bp Zoom in on locus 1 x4 CRISPR array Location: 243458-243684 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 243458-243684 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 243458-243684 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUXN01000023.1 Clostridioides difficile strain VRECD0076 genome assembly, contig: ERS716961SCcontig000023, whole genome shotgun sequence

⇒Summary: seq-len = 18924 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8630-10605 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 8630-9185 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 8630-9185 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 9787-10605 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 9787-10605 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8630-9185 bp]: array | spacers
           [Locus range 9787-10605 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUXN01000003.1 Clostridioides difficile strain VRECD0076 genome assembly, contig: ERS716961SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 519082 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20190-20284 bp Zoom in on locus 1 x2 CRISPR array Location: 20190-20284 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 20190-20284 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20190-20284 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)