CRISPRone

CRISPRone report for GCA_900168095.1_IMG-taxon_2606217733_annotated_assembly

♦ Seq 1: FUYU01000001.1 Pseudomonas aeruginosa strain NFHH01 genome assembly, contig: Ga0059024_101, whole genome shotgun sequence

⇒Summary: seq-len = 851291 bp; # of CRISPR array = 4; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 658568-668957 bp Zoom in on locus 1 x10 x2 x2 x4 CRISPR array Location: 658568-659147 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 658568-659147 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 659241-659331 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 659241-659331 bp Num of repeats: 2 Spacers: s10-s10 Gene: cd09641:cas3HD Type: Type-I Location: 660104-662785 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 662788-664356 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 664353-664883 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 664893-666035 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 666037-666699 bp Gene: pfam08798:cas6e Type: other Location: 666674-667285 bp Gene: cd09719:cas1 Type: universal Location: 667312-668202 bp Gene: pfam09707:cas2 Type: universal Location: 668199-668498 bp CRISPR array Location: 668563-668653 bp Num of repeats: 2 Spacers: s11-s11 CRISPR array Location: 668563-668653 bp Num of repeats: 2 Spacers: s11-s11 CRISPR array Location: 668745-668957 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 668745-668957 bp Num of repeats: 4 Spacers: s12-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 658568-659147 bp]: array | spacers
           [Locus range 659241-659331 bp]: array | spacers
           [Locus range 668563-668653 bp]: array | spacers
           [Locus range 668745-668957 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUYU01000012.1 Pseudomonas aeruginosa strain NFHH01 genome assembly, contig: Ga0059024_112, whole genome shotgun sequence

⇒Summary: seq-len = 211168 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 162044-172603 bp Zoom in on locus 1 x15 x19 CRISPR array Location: 162044-162912 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 162044-162912 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09718:cas1 Type: universal Location: 163172-164146 bp Gene: COG1203:cas3 Type: Type-I Location: 164143-167373 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 167431-168735 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 168722-169705 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 169716-170744 bp Gene: cd09739:cas6f Type: other Location: 170748-171311 bp CRISPR array Location: 171495-172603 bp Num of repeats: 19 Spacers: s15-s32 CRISPR array Location: 171495-172603 bp Num of repeats: 19 Spacers: s15-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 162044-162912 bp]: array | spacers
           [Locus range 171495-172603 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)