CRISPRone

CRISPRone report for GCA_900243075.1_173070

♦ Seq 1: OEZH01000130.1 Clostridioides difficile strain 173070 genome assembly, contig: 173070_contig130, whole genome shotgun sequence

⇒Summary: seq-len = 58436 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5010-5298 bp Zoom in on locus 1 x5 CRISPR array Location: 5010-5298 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5010-5298 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5010-5298 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: OEZH01000077.1 Clostridioides difficile strain 173070 genome assembly, contig: 173070_contig77, whole genome shotgun sequence

⇒Summary: seq-len = 15701 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11440-15259 bp Zoom in on locus 1 x2 x8 CRISPR array Location: 11440-11532 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 11440-11532 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 14773-15259 bp Num of repeats: 8 Spacers: s2-s8 CRISPR array Location: 14773-15259 bp Num of repeats: 8 Spacers: s2-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11440-11532 bp]: array | spacers
           [Locus range 14773-15259 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: OEZH01000173.1 Clostridioides difficile strain 173070 genome assembly, contig: 173070_contig173, whole genome shotgun sequence

⇒Summary: seq-len = 61462 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51778-60124 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 51778-54186 bp Gene: cd09693:cas5 Type: Type-I Location: 54213-55010 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 55026-56039 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 56059-57534 bp Gene: pfam01881:cas6 Type: other Location: 57539-58276 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 59015-60124 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: OEZH01000152.1 Clostridioides difficile strain 173070 genome assembly, contig: 173070_contig152, whole genome shotgun sequence

⇒Summary: seq-len = 168141 bp; # of CRISPR array = 1; # of cas gene = 12  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28873-36143 bp 2 Locus 2: 108595-120397 bp Zoom in on locus 1 Zoom in on locus 2 x34 Gene: COG0640:csa3 Type: Subtype-I-A Location: 28873-29310 bp Gene: unk Type: unknown Location: 29396-29983 bp Gene: unk Type: unknown Location: 30285-30905 bp Gene: cas14:cas14 Type: Type-V Location: 31198-31953 bp Gene: unk Type: unknown Location: 32423-32638 bp Gene: unk Type: unknown Location: 33170-35080 bp Gene: cls001593:casR Type: Type-I Location: 35358-36143 bp CRISPR array Location: 108595-110792 bp Num of repeats: 34 Spacers: s1-s33 CRISPR array Location: 108595-110792 bp Num of repeats: 34 Spacers: s1-s33 Gene: cd09725:cas2 Type: universal Location: 110976-111242 bp Gene: cd09722:cas1 Type: universal Location: 111246-112226 bp Gene: pfam01930:cas4 Type: Type-I Location: 112229-112747 bp Gene: COG1203:cas3 Type: Type-I Location: 112795-115122 bp Gene: cd09693:cas5 Type: Type-I Location: 115127-115828 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 115830-116744 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 116746-118623 bp Gene: pfam01881:cas6 Type: other Location: 118629-119423 bp Gene: pfam13280:WYL Type: other Location: 119444-120397 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108595-110792 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: OEZH01000132.1 Clostridioides difficile strain 173070 genome assembly, contig: 173070_contig132, whole genome shotgun sequence

⇒Summary: seq-len = 94364 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78329-78881 bp Zoom in on locus 1 x9 CRISPR array Location: 78329-78881 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 78329-78881 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78329-78881 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)