CRISPRone

CRISPRone report for GCA_900243115.1_57267

♦ Seq 1: OEZD01000011.1 Clostridioides difficile strain 57267 genome assembly, contig: 57267_contig11, whole genome shotgun sequence

⇒Summary: seq-len = 51135 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11548-15253 bp Zoom in on locus 1 x9 x7 CRISPR array Location: 11548-12104 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 11548-12104 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 14834-15253 bp Num of repeats: 7 Spacers: s9-s14 CRISPR array Location: 14834-15253 bp Num of repeats: 7 Spacers: s9-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11548-12104 bp]: array | spacers
           [Locus range 14834-15253 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: OEZD01000018.1 Clostridioides difficile strain 57267 genome assembly, contig: 57267_contig18, whole genome shotgun sequence

⇒Summary: seq-len = 356184 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 122546-122836 bp 2 Locus 2: 169784-170140 bp 3 Locus 3: 278109-288772 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 Zoom in on locus 3 x25 CRISPR array Location: 122546-122836 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 122546-122836 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 169784-170140 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 169784-170140 bp Num of repeats: 6 Spacers: s5-s9 Gene: cd09725:cas2 Type: universal Location: 278109-278399 bp Gene: cd09722:cas1 Type: universal Location: 278610-278813 bp Gene: cd09634:cas1 Type: universal Location: 278840-279616 bp Gene: pfam01930:cas4 Type: Type-I Location: 279642-280136 bp CRISPR array Location: 280221-281832 bp Num of repeats: 25 Spacers: s10-s33 CRISPR array Location: 280221-281832 bp Num of repeats: 25 Spacers: s10-s33 Gene: unk Type: unknown Location: 281002-281370 bp Gene: cd09641:cas3HD Type: Type-I Location: 282022-284580 bp Gene: cd09693:cas5 Type: Type-I Location: 284604-285344 bp Gene: unk Type: unknown Location: 285346-285717 bp Gene: pfam05107:cas7b Type: Type-I Location: 285786-286340 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 286389-288065 bp Gene: cd09652:cas6 Type: other Location: 288077-288772 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 122546-122836 bp]: array | spacers
           [Locus range 169784-170140 bp]: array | spacers
           [Locus range 280221-281832 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: OEZD01000064.1 Clostridioides difficile strain 57267 genome assembly, contig: 57267_contig64, whole genome shotgun sequence

⇒Summary: seq-len = 55939 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1597-2351 bp Zoom in on locus 1 x12 CRISPR array Location: 1597-2351 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 1597-2351 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1597-2351 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: OEZD01000026.1 Clostridioides difficile strain 57267 genome assembly, contig: 57267_contig26, whole genome shotgun sequence

⇒Summary: seq-len = 199572 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192949-199437 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 192949-195357 bp Gene: cd09693:cas5 Type: Type-I Location: 195384-196181 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 196197-197210 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 197229-198695 bp Gene: pfam01881:cas6 Type: other Location: 198700-199437 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: OEZD01000005.1 Clostridioides difficile strain 57267 genome assembly, contig: 57267_contig5, whole genome shotgun sequence

⇒Summary: seq-len = 47222 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26678-37070 bp Zoom in on locus 1 x13 CRISPR array Location: 26678-27494 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 26678-27494 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09725:cas2 Type: universal Location: 27678-27944 bp Gene: cd09722:cas1 Type: universal Location: 27947-28927 bp Gene: pfam01930:cas4 Type: Type-I Location: 28930-29448 bp Gene: COG1203:cas3 Type: Type-I Location: 29496-31817 bp Gene: cd09693:cas5 Type: Type-I Location: 31828-32529 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 32531-33445 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 33447-35297 bp Gene: pfam01881:cas6 Type: other Location: 35303-35926 bp Gene: pfam13280:WYL Type: other Location: 36117-37070 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26678-27494 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)