CRISPRone

CRISPRone report for GCA_900243175.1_J9965

♦ Seq 1: OEZM01000079.1 Clostridioides difficile strain J9965 genome assembly, contig: J9965_contig79, whole genome shotgun sequence

⇒Summary: seq-len = 166121 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27451-35329 bp 2 Locus 2: 86523-97480 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 27451-28560 bp Gene: pfam01881:cas6 Type: other Location: 28819-29556 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 29561-31036 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31056-32072 bp Gene: cd09693:cas5 Type: Type-I Location: 32088-32894 bp Gene: cd09641:cas3HD Type: Type-I Location: 32921-35329 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 86523-87008 bp Gene: cd06127:DEDDh Type: Type-I Location: 93829-94857 bp Gene: unk Type: unknown Location: 95228-95734 bp Gene: unk Type: unknown Location: 96147-96815 bp Gene: cd06127:DEDDh Type: Type-I Location: 96974-97480 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: OEZM01000092.1 Clostridioides difficile strain J9965 genome assembly, contig: J9965_contig92, whole genome shotgun sequence

⇒Summary: seq-len = 319566 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 253534-264313 bp Zoom in on locus 1 x19 CRISPR array Location: 253534-254748 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 253534-254748 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09725:cas2 Type: universal Location: 254932-255198 bp Gene: cd09722:cas1 Type: universal Location: 255201-256181 bp Gene: pfam01930:cas4 Type: Type-I Location: 256184-256702 bp Gene: COG1203:cas3 Type: Type-I Location: 256750-259071 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 259082-259783 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259785-260699 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260701-262578 bp Gene: pfam01881:cas6 Type: other Location: 262584-263378 bp Gene: pfam13280:WYL Type: other Location: 263399-264313 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 253534-254748 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: OEZM01000069.1 Clostridioides difficile strain J9965 genome assembly, contig: J9965_contig69, whole genome shotgun sequence

⇒Summary: seq-len = 41156 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9996-10356 bp Zoom in on locus 1 x6 CRISPR array Location: 9996-10356 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 9996-10356 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9996-10356 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: OEZM01000051.1 Clostridioides difficile strain J9965 genome assembly, contig: J9965_contig51, whole genome shotgun sequence

⇒Summary: seq-len = 537630 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 133587-133747 bp 2 Locus 2: 441316-441543 bp 3 Locus 3: 525200-525557 bp Zoom in on locus 1 x3 Zoom in on locus 2 x4 Zoom in on locus 3 x6 CRISPR array Location: 133587-133747 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 133587-133747 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 441316-441543 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 441316-441543 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 525200-525557 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 525200-525557 bp Num of repeats: 6 Spacers: s6-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 133587-133747 bp]: array | spacers
           [Locus range 441316-441543 bp]: array | spacers
           [Locus range 525200-525557 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: OEZM01000074.1 Clostridioides difficile strain J9965 genome assembly, contig: J9965_contig74, whole genome shotgun sequence

⇒Summary: seq-len = 155984 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13284-13377 bp 2 Locus 2: 50342-50501 bp Zoom in on locus 1 x2 Zoom in on locus 2 x3 CRISPR array Location: 13284-13377 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 13284-13377 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 50342-50501 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 50342-50501 bp Num of repeats: 3 Spacers: s2-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13284-13377 bp]: array | spacers
           [Locus range 50342-50501 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)