CRISPRone

CRISPRone report for GCA_900243195.1_CD07-468

♦ Seq 1: OEZN01000072.1 Clostridioides difficile strain CD07-468 genome assembly, contig: CD07-468_contig72, whole genome shotgun sequence

⇒Summary: seq-len = 144978 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112762-113586 bp Zoom in on locus 1 x13 CRISPR array Location: 112762-113586 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 112762-113586 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112762-113586 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: OEZN01000064.1 Clostridioides difficile strain CD07-468 genome assembly, contig: CD07-468_contig64, whole genome shotgun sequence

⇒Summary: seq-len = 131868 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16084-16179 bp Zoom in on locus 1 x2 CRISPR array Location: 16084-16179 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 16084-16179 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16084-16179 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: OEZN01000032.1 Clostridioides difficile strain CD07-468 genome assembly, contig: CD07-468_contig32, whole genome shotgun sequence

⇒Summary: seq-len = 123255 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95558-106740 bp Zoom in on locus 1 x25 CRISPR array Location: 95558-97175 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 95558-97175 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 96404-96637 bp Gene: unk Type: unknown Location: 96859-97026 bp Gene: cd09725:cas2 Type: universal Location: 97359-97625 bp Gene: cd09722:cas1 Type: universal Location: 97628-98608 bp Gene: pfam01930:cas4 Type: Type-I Location: 98611-99129 bp Gene: COG1203:cas3 Type: Type-I Location: 99177-101498 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 101509-102210 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 102212-103126 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 103128-105005 bp Gene: pfam01881:cas6 Type: other Location: 105011-105805 bp Gene: pfam13280:WYL Type: other Location: 105826-106740 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 95558-97175 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: OEZN01000057.1 Clostridioides difficile strain CD07-468 genome assembly, contig: CD07-468_contig57, whole genome shotgun sequence

⇒Summary: seq-len = 93798 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 68101-70612 bp Zoom in on locus 1 x6 x5 CRISPR array Location: 68101-68458 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 68101-68458 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 70322-70612 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 70322-70612 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 68101-68458 bp]: array | spacers
           [Locus range 70322-70612 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: OEZN01000025.1 Clostridioides difficile strain CD07-468 genome assembly, contig: CD07-468_contig25, whole genome shotgun sequence

⇒Summary: seq-len = 31963 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 954-1912 bp Zoom in on locus 1 x15 CRISPR array Location: 954-1912 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 954-1912 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 954-1912 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: OEZN01000073.1 Clostridioides difficile strain CD07-468 genome assembly, contig: CD07-468_contig73, whole genome shotgun sequence

⇒Summary: seq-len = 55366 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24371-24664 bp Zoom in on locus 1 x5 CRISPR array Location: 24371-24664 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 24371-24664 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24371-24664 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: OEZN01000050.1 Clostridioides difficile strain CD07-468 genome assembly, contig: CD07-468_contig50, whole genome shotgun sequence

⇒Summary: seq-len = 107726 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30653-37186 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 30653-31300 bp Gene: pfam01881:cas6 Type: other Location: 31291-32055 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 32057-33223 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 33244-34314 bp Gene: COG1203:cas3 Type: Type-I Location: 34325-36310 bp CRISPR array Location: 36563-37186 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 36563-37186 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36563-37186 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: OEZN01000096.1 Clostridioides difficile strain CD07-468 genome assembly, contig: CD07-468_contig96, whole genome shotgun sequence

⇒Summary: seq-len = 122112 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69130-77005 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 69130-70239 bp Gene: pfam01881:cas6 Type: other Location: 70498-71235 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 71240-72715 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72735-73748 bp Gene: cd09693:cas5 Type: Type-I Location: 73764-74570 bp Gene: cd09641:cas3HD Type: Type-I Location: 74597-77005 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: OEZN01000082.1 Clostridioides difficile strain CD07-468 genome assembly, contig: CD07-468_contig82, whole genome shotgun sequence

⇒Summary: seq-len = 258290 bp; # of CRISPR array = 1; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 178418-179105 bp 2 Locus 2: 255052-258288 bp Zoom in on locus 1 x11 Zoom in on locus 2 CRISPR array Location: 178418-179105 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 178418-179105 bp Num of repeats: 11 Spacers: s1-s10 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 255052-255651 bp Gene: unk Type: unknown Location: 255819-256286 bp Gene: COG2378:WYL Type: other Location: 256391-257308 bp Gene: cas14:cas14 Type: Type-V Location: 257947-258288 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 178418-179105 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: OEZN01000037.1 Clostridioides difficile strain CD07-468 genome assembly, contig: CD07-468_contig37, whole genome shotgun sequence

⇒Summary: seq-len = 117248 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5348-5973 bp Zoom in on locus 1 x10 CRISPR array Location: 5348-5973 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 5348-5973 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5348-5973 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)