CRISPRone

CRISPRone report for GCA_900243205.1_CH6230

♦ Seq 1: OEZU01000214.1 Clostridioides difficile strain CH6230 genome assembly, contig: CH6230_contig214, whole genome shotgun sequence

⇒Summary: seq-len = 97875 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69239-77114 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 69239-70348 bp Gene: pfam01881:cas6 Type: other Location: 70607-71344 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 71349-72824 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72844-73857 bp Gene: cd09693:cas5 Type: Type-I Location: 73873-74679 bp Gene: cd09641:cas3HD Type: Type-I Location: 74706-77114 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: OEZU01000141.1 Clostridioides difficile strain CH6230 genome assembly, contig: CH6230_contig141, whole genome shotgun sequence

⇒Summary: seq-len = 67515 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51826-51921 bp Zoom in on locus 1 x2 CRISPR array Location: 51826-51921 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 51826-51921 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 51826-51921 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: OEZU01000082.1 Clostridioides difficile strain CH6230 genome assembly, contig: CH6230_contig82, whole genome shotgun sequence

⇒Summary: seq-len = 28913 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9693-21571 bp Zoom in on locus 1 x36 Gene: pfam13280:WYL Type: other Location: 9693-10580 bp Gene: pfam01881:cas6 Type: other Location: 10658-11395 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11401-13278 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13280-14194 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 14196-14897 bp Gene: COG1203:cas3 Type: Type-I Location: 14908-17229 bp Gene: pfam01930:cas4 Type: Type-I Location: 17244-17795 bp Gene: cd09722:cas1 Type: universal Location: 17798-18778 bp Gene: cd09725:cas2 Type: universal Location: 18781-19047 bp CRISPR array Location: 19231-21571 bp Num of repeats: 36 Spacers: s1-s35 CRISPR array Location: 19231-21571 bp Num of repeats: 36 Spacers: s1-s35 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19231-21571 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: OEZU01000215.1 Clostridioides difficile strain CH6230 genome assembly, contig: CH6230_contig215, whole genome shotgun sequence

⇒Summary: seq-len = 10034 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6556-7698 bp Zoom in on locus 1 x18 CRISPR array Location: 6556-7698 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 6556-7698 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6556-7698 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: OEZU01000231.1 Clostridioides difficile strain CH6230 genome assembly, contig: CH6230_contig231, whole genome shotgun sequence

⇒Summary: seq-len = 30911 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23752-24502 bp Zoom in on locus 1 x12 CRISPR array Location: 23752-24502 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 23752-24502 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23752-24502 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: OEZU01000014.1 Clostridioides difficile strain CH6230 genome assembly, contig: CH6230_contig14, whole genome shotgun sequence

⇒Summary: seq-len = 63894 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14228-14519 bp Zoom in on locus 1 x5 CRISPR array Location: 14228-14519 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 14228-14519 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14228-14519 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: OEZU01000178.1 Clostridioides difficile strain CH6230 genome assembly, contig: CH6230_contig178, whole genome shotgun sequence

⇒Summary: seq-len = 15139 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207-7594 bp Zoom in on locus 1 x17 Gene: cd09693:cas5 Type: Type-I Location: 207-854 bp Gene: pfam01881:cas6 Type: other Location: 845-1609 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 1611-2759 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2780-3850 bp Gene: COG1203:cas3 Type: Type-I Location: 3861-5843 bp CRISPR array Location: 6509-7594 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 6509-7594 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 6509-7594 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: OEZU01000146.1 Clostridioides difficile strain CH6230 genome assembly, contig: CH6230_contig146, whole genome shotgun sequence

⇒Summary: seq-len = 15749 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13590-13750 bp Zoom in on locus 1 x3 CRISPR array Location: 13590-13750 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 13590-13750 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13590-13750 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: OEZU01000055.1 Clostridioides difficile strain CH6230 genome assembly, contig: CH6230_contig55, whole genome shotgun sequence

⇒Summary: seq-len = 28307 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24419-25243 bp Zoom in on locus 1 x13 CRISPR array Location: 24419-25243 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 24419-25243 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24419-25243 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: OEZU01000019.1 Clostridioides difficile strain CH6230 genome assembly, contig: CH6230_contig19, whole genome shotgun sequence

⇒Summary: seq-len = 10168 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4126-4879 bp Zoom in on locus 1 x12 CRISPR array Location: 4126-4879 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 4126-4879 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4126-4879 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: OEZU01000046.1 Clostridioides difficile strain CH6230 genome assembly, contig: CH6230_contig46, whole genome shotgun sequence

⇒Summary: seq-len = 16074 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2793-3878 bp Zoom in on locus 1 x17 CRISPR array Location: 2793-3878 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 2793-3878 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2793-3878 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)