CRISPRone

CRISPRone report for GCA_900243215.1_51377

♦ Seq 1: OEZS01000020.1 Clostridioides difficile strain 51377 genome assembly, contig: 51377_contig20, whole genome shotgun sequence

⇒Summary: seq-len = 36670 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4481-14420 bp Zoom in on locus 1 x14 Gene: cd09652:cas6 Type: other Location: 4481-5176 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 5188-6927 bp Gene: pfam05107:cas7b Type: Type-I Location: 6920-7909 bp Gene: cd09693:cas5 Type: Type-I Location: 7911-8651 bp Gene: cd09641:cas3HD Type: Type-I Location: 8675-11233 bp CRISPR array Location: 11423-12308 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 11423-12308 bp Num of repeats: 14 Spacers: s1-s13 Gene: pfam01930:cas4 Type: Type-I Location: 12392-12886 bp Gene: cd09722:cas1 Type: universal Location: 12912-13919 bp Gene: cd09725:cas2 Type: universal Location: 14130-14420 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 11423-12308 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: OEZS01000018.1 Clostridioides difficile strain 51377 genome assembly, contig: 51377_contig18, whole genome shotgun sequence

⇒Summary: seq-len = 72262 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45687-46245 bp Zoom in on locus 1 x9 CRISPR array Location: 45687-46245 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 45687-46245 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45687-46245 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: OEZS01000093.1 Clostridioides difficile strain 51377 genome assembly, contig: 51377_contig93, whole genome shotgun sequence

⇒Summary: seq-len = 188191 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51994-53201 bp Zoom in on locus 1 Gene: pfam09827:cas2 Type: universal Location: 51994-52299 bp Gene: COG1518:cas1 Type: universal Location: 52296-53201 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: OEZS01000154.1 Clostridioides difficile strain 51377 genome assembly, contig: 51377_contig154, whole genome shotgun sequence

⇒Summary: seq-len = 41301 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7820-19070 bp Zoom in on locus 1 x28 CRISPR array Location: 7820-9623 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 7820-9623 bp Num of repeats: 28 Spacers: s1-s27 Gene: cd09718:cas1 Type: universal Location: 17026-18681 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 18693-19070 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7820-9623 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: OEZS01000161.1 Clostridioides difficile strain 51377 genome assembly, contig: 51377_contig161, whole genome shotgun sequence

⇒Summary: seq-len = 9015 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5862-7407 bp Zoom in on locus 1 x24 CRISPR array Location: 5862-7407 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 5862-7407 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5862-7407 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: OEZS01000011.1 Clostridioides difficile strain 51377 genome assembly, contig: 51377_contig11, whole genome shotgun sequence

⇒Summary: seq-len = 11986 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120-6608 bp Zoom in on locus 1 Gene: pfam01881:cas6 Type: other Location: 120-857 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 862-2328 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2347-3360 bp Gene: cd09693:cas5 Type: Type-I Location: 3376-4173 bp Gene: cd09641:cas3HD Type: Type-I Location: 4200-6608 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: OEZS01000142.1 Clostridioides difficile strain 51377 genome assembly, contig: 51377_contig142, whole genome shotgun sequence

⇒Summary: seq-len = 62068 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4916-5403 bp Zoom in on locus 1 x8 CRISPR array Location: 4916-5403 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 4916-5403 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4916-5403 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: OEZS01000027.1 Clostridioides difficile strain 51377 genome assembly, contig: 51377_contig27, whole genome shotgun sequence

⇒Summary: seq-len = 51119 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29340-41506 bp Zoom in on locus 1 x40 CRISPR array Location: 29340-31929 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 29340-31929 bp Num of repeats: 40 Spacers: s1-s39 Gene: cd09725:cas2 Type: universal Location: 32113-32379 bp Gene: cd09722:cas1 Type: universal Location: 32382-33362 bp Gene: pfam01930:cas4 Type: Type-I Location: 33365-33883 bp Gene: COG1203:cas3 Type: Type-I Location: 33931-36252 bp Gene: cd09693:cas5 Type: Type-I Location: 36263-36964 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 36966-37880 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 37882-39732 bp Gene: pfam01881:cas6 Type: other Location: 39738-40475 bp Gene: pfam13280:WYL Type: other Location: 40553-41506 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 29340-31929 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)