CRISPRone

CRISPRone report for GCA_900243225.1_1470

♦ Seq 1: OEZL01000035.1 Clostridioides difficile strain 1470 genome assembly, contig: 1470_contig35, whole genome shotgun sequence

⇒Summary: seq-len = 147668 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67187-71064 bp Zoom in on locus 1 x2 x6 x14 x2 CRISPR array Location: 67187-67280 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 67187-67280 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 67341-67699 bp Num of repeats: 6 Spacers: s2-s6 CRISPR array Location: 67341-67699 bp Num of repeats: 6 Spacers: s2-s6 CRISPR array Location: 68301-69188 bp Num of repeats: 14 Spacers: s7-s19 CRISPR array Location: 68301-69188 bp Num of repeats: 14 Spacers: s7-s19 CRISPR array Location: 70969-71064 bp Num of repeats: 2 Spacers: s20-s20 CRISPR array Location: 70969-71064 bp Num of repeats: 2 Spacers: s20-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 67187-67280 bp]: array | spacers
           [Locus range 67341-67699 bp]: array | spacers
           [Locus range 68301-69188 bp]: array | spacers
           [Locus range 70969-71064 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: OEZL01000086.1 Clostridioides difficile strain 1470 genome assembly, contig: 1470_contig86, whole genome shotgun sequence

⇒Summary: seq-len = 153356 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98322-98741 bp Zoom in on locus 1 x7 CRISPR array Location: 98322-98741 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 98322-98741 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 98322-98741 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: OEZL01000062.1 Clostridioides difficile strain 1470 genome assembly, contig: 1470_contig62, whole genome shotgun sequence

⇒Summary: seq-len = 17078 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5251-5346 bp Zoom in on locus 1 x2 CRISPR array Location: 5251-5346 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 5251-5346 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5251-5346 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: OEZL01000026.1 Clostridioides difficile strain 1470 genome assembly, contig: 1470_contig26, whole genome shotgun sequence

⇒Summary: seq-len = 396811 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190481-201439 bp 2 Locus 2: 252649-262372 bp 3 Locus 3: 342159-342515 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x6 Gene: cd06127:DEDDh Type: Type-I Location: 190481-190987 bp Gene: unk Type: unknown Location: 191146-191814 bp Gene: unk Type: unknown Location: 192227-192733 bp Gene: cd06127:DEDDh Type: Type-I Location: 193105-194142 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 200954-201439 bp Gene: cd09641:cas3HD Type: Type-I Location: 252649-255057 bp Gene: cd09693:cas5 Type: Type-I Location: 255084-255881 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 255897-256910 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 256930-258396 bp Gene: pfam01881:cas6 Type: other Location: 258401-259138 bp Gene: unk Type: unknown Location: 259452-259910 bp Gene: cas14:cas14 Type: Type-V Location: 259938-261110 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 261263-262372 bp CRISPR array Location: 342159-342515 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 342159-342515 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 342159-342515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: OEZL01000032.1 Clostridioides difficile strain 1470 genome assembly, contig: 1470_contig32, whole genome shotgun sequence

⇒Summary: seq-len = 314508 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 180067-180228 bp 2 Locus 2: 289486-290106 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 CRISPR array Location: 180067-180228 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 180067-180228 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 289486-290106 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 289486-290106 bp Num of repeats: 10 Spacers: s3-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 180067-180228 bp]: array | spacers
           [Locus range 289486-290106 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)