CRISPRone

CRISPRone report for GCA_900243235.1_CD08-070

♦ Seq 1: OEZO01000069.1 Clostridioides difficile strain CD08-070 genome assembly, contig: CD08-070_contig69, whole genome shotgun sequence

⇒Summary: seq-len = 237932 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89011-97338 bp 2 Locus 2: 149941-160894 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 89011-90120 bp Gene: unk Type: unknown Location: 90573-90749 bp Gene: pfam01881:cas6 Type: other Location: 90850-91587 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91592-93058 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 93077-94090 bp Gene: cd09693:cas5 Type: Type-I Location: 94106-94903 bp Gene: cd09641:cas3HD Type: Type-I Location: 94930-97338 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149941-150426 bp Gene: cd06127:DEDDh Type: Type-I Location: 157241-158278 bp Gene: unk Type: unknown Location: 158642-159148 bp Gene: unk Type: unknown Location: 159561-160229 bp Gene: cd06127:DEDDh Type: Type-I Location: 160388-160894 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: OEZO01000002.1 Clostridioides difficile strain CD08-070 genome assembly, contig: CD08-070_contig2, whole genome shotgun sequence

⇒Summary: seq-len = 56352 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53608-54756 bp Zoom in on locus 1 x18 CRISPR array Location: 53608-54756 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 53608-54756 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53608-54756 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: OEZO01000024.1 Clostridioides difficile strain CD08-070 genome assembly, contig: CD08-070_contig24, whole genome shotgun sequence

⇒Summary: seq-len = 147276 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125755-137453 bp Zoom in on locus 1 x33 CRISPR array Location: 125755-127876 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125755-127876 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128060-128326 bp Gene: cd09722:cas1 Type: universal Location: 128329-129309 bp Gene: pfam01930:cas4 Type: Type-I Location: 129312-129830 bp Gene: COG1203:cas3 Type: Type-I Location: 129878-132199 bp Gene: cd09693:cas5 Type: Type-I Location: 132210-132911 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132913-133827 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133829-135679 bp Gene: pfam01881:cas6 Type: other Location: 135685-136422 bp Gene: pfam13280:WYL Type: other Location: 136500-137453 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125755-127876 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: OEZO01000022.1 Clostridioides difficile strain CD08-070 genome assembly, contig: CD08-070_contig22, whole genome shotgun sequence

⇒Summary: seq-len = 187063 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 263-11982 bp 2 Locus 2: 119931-120745 bp 3 Locus 3: 158330-170641 bp Zoom in on locus 1 x41 Zoom in on locus 2 x13 Zoom in on locus 3 x44 Gene: cd09652:cas6 Type: other Location: 263-958 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 970-2709 bp Gene: pfam05107:cas7b Type: Type-I Location: 2702-3691 bp Gene: cd09693:cas5 Type: Type-I Location: 3693-4433 bp Gene: cd09641:cas3HD Type: Type-I Location: 4457-7015 bp CRISPR array Location: 7205-9870 bp Num of repeats: 41 Spacers: s1-s40 CRISPR array Location: 7205-9870 bp Num of repeats: 41 Spacers: s1-s40 Gene: pfam01930:cas4 Type: Type-I Location: 9954-10448 bp Gene: cd09722:cas1 Type: universal Location: 10474-11481 bp Gene: cd09725:cas2 Type: universal Location: 11692-11982 bp CRISPR array Location: 119931-120745 bp Num of repeats: 13 Spacers: s41-s52 CRISPR array Location: 119931-120745 bp Num of repeats: 13 Spacers: s41-s52 Gene: COG0640:csa3 Type: Subtype-I-A Location: 158330-158707 bp Gene: cd09718:cas1 Type: universal Location: 158719-160374 bp CRISPR array Location: 167776-170641 bp Num of repeats: 44 Spacers: s53-s95 CRISPR array Location: 167776-170641 bp Num of repeats: 44 Spacers: s53-s95 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7205-9870 bp]: array | spacers
           [Locus range 119931-120745 bp]: array | spacers
           [Locus range 167776-170641 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: OEZO01000031.1 Clostridioides difficile strain CD08-070 genome assembly, contig: CD08-070_contig31, whole genome shotgun sequence

⇒Summary: seq-len = 10497 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5075-5701 bp Zoom in on locus 1 x10 CRISPR array Location: 5075-5701 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 5075-5701 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5075-5701 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)