CRISPRone

CRISPRone report for GCA_900243245.1_IS_25

♦ Seq 1: OEZP01000124.1 Clostridioides difficile strain IS 25 genome assembly, contig: IS_25_contig124, whole genome shotgun sequence

⇒Summary: seq-len = 144482 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 137444-143933 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 137444-139852 bp Gene: cd09693:cas5 Type: Type-I Location: 139879-140676 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 140692-141705 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 141725-143191 bp Gene: pfam01881:cas6 Type: other Location: 143196-143933 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: OEZP01000067.1 Clostridioides difficile strain IS 25 genome assembly, contig: IS_25_contig67, whole genome shotgun sequence

⇒Summary: seq-len = 198532 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 171598-172418 bp Zoom in on locus 1 x13 CRISPR array Location: 171598-172418 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 171598-172418 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 171598-172418 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: OEZP01000085.1 Clostridioides difficile strain IS 25 genome assembly, contig: IS_25_contig85, whole genome shotgun sequence

⇒Summary: seq-len = 112737 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17745-18864 bp Zoom in on locus 1 x3 x6 CRISPR array Location: 17745-17906 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 17745-17906 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 18505-18864 bp Num of repeats: 6 Spacers: s3-s7 CRISPR array Location: 18505-18864 bp Num of repeats: 6 Spacers: s3-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17745-17906 bp]: array | spacers
           [Locus range 18505-18864 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: OEZP01000017.1 Clostridioides difficile strain IS 25 genome assembly, contig: IS_25_contig17, whole genome shotgun sequence

⇒Summary: seq-len = 56788 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53103-54310 bp Zoom in on locus 1 x19 CRISPR array Location: 53103-54310 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 53103-54310 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53103-54310 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: OEZP01000008.1 Clostridioides difficile strain IS 25 genome assembly, contig: IS_25_contig8, whole genome shotgun sequence

⇒Summary: seq-len = 178470 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59512-60135 bp Zoom in on locus 1 x10 CRISPR array Location: 59512-60135 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 59512-60135 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59512-60135 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: OEZP01000120.1 Clostridioides difficile strain IS 25 genome assembly, contig: IS_25_contig120, whole genome shotgun sequence

⇒Summary: seq-len = 21004 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4807-5225 bp Zoom in on locus 1 x7 CRISPR array Location: 4807-5225 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 4807-5225 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4807-5225 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: OEZP01000104.1 Clostridioides difficile strain IS 25 genome assembly, contig: IS_25_contig104, whole genome shotgun sequence

⇒Summary: seq-len = 11202 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4202-4362 bp Zoom in on locus 1 x3 CRISPR array Location: 4202-4362 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 4202-4362 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4202-4362 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: OEZP01000009.1 Clostridioides difficile strain IS 25 genome assembly, contig: IS_25_contig9, whole genome shotgun sequence

⇒Summary: seq-len = 50687 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4186-4279 bp Zoom in on locus 1 x2 CRISPR array Location: 4186-4279 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 4186-4279 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4186-4279 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: OEZP01000136.1 Clostridioides difficile strain IS 25 genome assembly, contig: IS_25_contig136, whole genome shotgun sequence

⇒Summary: seq-len = 43318 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24417-25563 bp Zoom in on locus 1 x18 CRISPR array Location: 24417-25563 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 24417-25563 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24417-25563 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: OEZP01000138.1 Clostridioides difficile strain IS 25 genome assembly, contig: IS_25_contig138, whole genome shotgun sequence

⇒Summary: seq-len = 114004 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94178-104337 bp Zoom in on locus 1 x10 CRISPR array Location: 94178-94799 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 94178-94799 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09725:cas2 Type: universal Location: 94983-95249 bp Gene: cd09722:cas1 Type: universal Location: 95252-96232 bp Gene: pfam01930:cas4 Type: Type-I Location: 96235-96753 bp Gene: COG1203:cas3 Type: Type-I Location: 96801-99122 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 99133-99834 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 99836-100750 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 100752-102602 bp Gene: pfam01881:cas6 Type: other Location: 102608-103402 bp Gene: pfam13280:WYL Type: other Location: 103423-104337 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 94178-94799 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: OEZP01000105.1 Clostridioides difficile strain IS 25 genome assembly, contig: IS_25_contig105, whole genome shotgun sequence

⇒Summary: seq-len = 83658 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25645-26728 bp Zoom in on locus 1 x17 CRISPR array Location: 25645-26728 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 25645-26728 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25645-26728 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: OEZP01000110.1 Clostridioides difficile strain IS 25 genome assembly, contig: IS_25_contig110, whole genome shotgun sequence

⇒Summary: seq-len = 19993 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2077-2435 bp Zoom in on locus 1 x6 CRISPR array Location: 2077-2435 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2077-2435 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2077-2435 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)