CRISPRone

CRISPRone report for GCA_900243255.1_IS_58

♦ Seq 1: OEZT01000053.1 Clostridioides difficile strain IS 58 genome assembly, contig: IS_58_contig53, whole genome shotgun sequence

⇒Summary: seq-len = 95254 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15281-15572 bp 2 Locus 2: 74487-85663 bp Zoom in on locus 1 x5 Zoom in on locus 2 x25 CRISPR array Location: 15281-15572 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 15281-15572 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 74487-76086 bp Num of repeats: 25 Spacers: s5-s28 CRISPR array Location: 74487-76086 bp Num of repeats: 25 Spacers: s5-s28 Gene: cd09725:cas2 Type: universal Location: 76270-76536 bp Gene: cd09722:cas1 Type: universal Location: 76539-77519 bp Gene: pfam01930:cas4 Type: Type-I Location: 77522-78040 bp Gene: COG1203:cas3 Type: Type-I Location: 78088-80409 bp Gene: cd09693:cas5 Type: Type-I Location: 80420-81121 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 81123-82037 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 82039-83889 bp Gene: pfam01881:cas6 Type: other Location: 83895-84632 bp Gene: pfam13280:WYL Type: other Location: 84710-85663 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 15281-15572 bp]: array | spacers
           [Locus range 74487-76086 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: OEZT01000026.1 Clostridioides difficile strain IS 58 genome assembly, contig: IS_58_contig26, whole genome shotgun sequence

⇒Summary: seq-len = 8609 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5855-7001 bp Zoom in on locus 1 x18 CRISPR array Location: 5855-7001 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 5855-7001 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5855-7001 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: OEZT01000114.1 Clostridioides difficile strain IS 58 genome assembly, contig: IS_58_contig114, whole genome shotgun sequence

⇒Summary: seq-len = 202617 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 285-10951 bp 2 Locus 2: 118854-119603 bp 3 Locus 3: 157105-159149 bp 4 Locus 4: 195461-195622 bp Zoom in on locus 1 x25 Zoom in on locus 2 x12 Zoom in on locus 3 Zoom in on locus 4 x3 Gene: cd09652:cas6 Type: other Location: 285-980 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 992-2731 bp Gene: pfam05107:cas7b Type: Type-I Location: 2724-3713 bp Gene: cd09693:cas5 Type: Type-I Location: 3715-4455 bp Gene: cd09641:cas3HD Type: Type-I Location: 4479-7037 bp CRISPR array Location: 7227-8839 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 7227-8839 bp Num of repeats: 25 Spacers: s1-s24 Gene: pfam01930:cas4 Type: Type-I Location: 8923-9417 bp Gene: cd09722:cas1 Type: universal Location: 9443-10450 bp Gene: cd09725:cas2 Type: universal Location: 10661-10951 bp CRISPR array Location: 118854-119603 bp Num of repeats: 12 Spacers: s25-s35 CRISPR array Location: 118854-119603 bp Num of repeats: 12 Spacers: s25-s35 Gene: COG0640:csa3 Type: Subtype-I-A Location: 157105-157482 bp Gene: cd09718:cas1 Type: universal Location: 157494-159149 bp CRISPR array Location: 195461-195622 bp Num of repeats: 3 Spacers: s36-s37 CRISPR array Location: 195461-195622 bp Num of repeats: 3 Spacers: s36-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7227-8839 bp]: array | spacers
           [Locus range 118854-119603 bp]: array | spacers
           [Locus range 195461-195622 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: OEZT01000113.1 Clostridioides difficile strain IS 58 genome assembly, contig: IS_58_contig113, whole genome shotgun sequence

⇒Summary: seq-len = 89325 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26355-34682 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 26355-27464 bp Gene: unk Type: unknown Location: 27917-28093 bp Gene: pfam01881:cas6 Type: other Location: 28194-28931 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 28936-30402 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 30421-31434 bp Gene: cd09693:cas5 Type: Type-I Location: 31450-32247 bp Gene: cd09641:cas3HD Type: Type-I Location: 32274-34682 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: OEZT01000073.1 Clostridioides difficile strain IS 58 genome assembly, contig: IS_58_contig73, whole genome shotgun sequence

⇒Summary: seq-len = 28265 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16531-17616 bp Zoom in on locus 1 x17 CRISPR array Location: 16531-17616 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 16531-17616 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16531-17616 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)