CRISPRone

CRISPRone report for GCA_900243285.1_SUC36

♦ Seq 1: OEZZ01000032.1 Clostridioides difficile strain SUC36 genome assembly, contig: SUC36_contig32, whole genome shotgun sequence

⇒Summary: seq-len = 34516 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15914-16009 bp Zoom in on locus 1 x2 CRISPR array Location: 15914-16009 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 15914-16009 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15914-16009 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: OEZZ01000089.1 Clostridioides difficile strain SUC36 genome assembly, contig: SUC36_contig89, whole genome shotgun sequence

⇒Summary: seq-len = 259507 bp; # of CRISPR array = 0; # of cas gene = 8  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89399-97726 bp 2 Locus 2: 150328-161281 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 89399-90508 bp Gene: unk Type: unknown Location: 90961-91137 bp Gene: pfam01881:cas6 Type: other Location: 91238-91975 bp Gene: unk Type: unknown Location: 91980-93446 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 93465-94478 bp Gene: cd09693:cas5 Type: Type-I Location: 94494-95291 bp Gene: cd09641:cas3HD Type: Type-I Location: 95318-97726 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 150328-150813 bp Gene: cd06127:DEDDh Type: Type-I Location: 157628-158665 bp Gene: unk Type: unknown Location: 159029-159535 bp Gene: unk Type: unknown Location: 159948-160616 bp Gene: cd06127:DEDDh Type: Type-I Location: 160775-161281 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: OEZZ01000049.1 Clostridioides difficile strain SUC36 genome assembly, contig: SUC36_contig49, whole genome shotgun sequence

⇒Summary: seq-len = 418344 bp; # of CRISPR array = 2; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 173884-174044 bp 2 Locus 2: 211498-219341 bp Zoom in on locus 1 x3 Zoom in on locus 2 x7 CRISPR array Location: 173884-174044 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 173884-174044 bp Num of repeats: 3 Spacers: s1-s2 Gene: COG0640:csa3 Type: Subtype-I-A Location: 211498-211875 bp Gene: cd09718:cas1 Type: universal Location: 211887-213542 bp Gene: unk Type: unknown Location: 213603-214355 bp Gene: unk Type: unknown Location: 214566-214700 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 215318-215617 bp CRISPR array Location: 218917-219341 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 218917-219341 bp Num of repeats: 7 Spacers: s3-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 173884-174044 bp]: array | spacers
           [Locus range 218917-219341 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: OEZZ01000036.1 Clostridioides difficile strain SUC36 genome assembly, contig: SUC36_contig36, whole genome shotgun sequence

⇒Summary: seq-len = 128815 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 109111-118987 bp Zoom in on locus 1 x5 CRISPR array Location: 109111-109400 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 109111-109400 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09725:cas2 Type: universal Location: 109584-109850 bp Gene: cd09722:cas1 Type: universal Location: 109853-110650 bp Gene: pfam01930:cas4 Type: Type-I Location: 110846-111397 bp Gene: COG1203:cas3 Type: Type-I Location: 111412-113733 bp Gene: cd09693:cas5 Type: Type-I Location: 113744-114445 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 114447-115361 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 115363-117213 bp Gene: pfam01881:cas6 Type: other Location: 117219-117956 bp Gene: pfam13280:WYL Type: other Location: 118034-118987 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 109111-109400 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: OEZZ01000011.1 Clostridioides difficile strain SUC36 genome assembly, contig: SUC36_contig11, whole genome shotgun sequence

⇒Summary: seq-len = 54041 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40995-41914 bp Zoom in on locus 1 x3 x3 CRISPR array Location: 40995-41155 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 40995-41155 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 41753-41914 bp Num of repeats: 3 Spacers: s3-s4 CRISPR array Location: 41753-41914 bp Num of repeats: 3 Spacers: s3-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 40995-41155 bp]: array | spacers
           [Locus range 41753-41914 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)