CRISPRone

CRISPRone report for GCA_900243295.1_WA151

♦ Seq 1: OEZY01000092.1 Clostridioides difficile strain WA151 genome assembly, contig: WA151_contig92, whole genome shotgun sequence

⇒Summary: seq-len = 71901 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26152-26245 bp Zoom in on locus 1 x2 CRISPR array Location: 26152-26245 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 26152-26245 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 26152-26245 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: OEZY01000187.1 Clostridioides difficile strain WA151 genome assembly, contig: WA151_contig187, whole genome shotgun sequence

⇒Summary: seq-len = 24757 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24189-24548 bp Zoom in on locus 1 x6 CRISPR array Location: 24189-24548 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 24189-24548 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24189-24548 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: OEZY01000188.1 Clostridioides difficile strain WA151 genome assembly, contig: WA151_contig188, whole genome shotgun sequence

⇒Summary: seq-len = 11379 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5283-5508 bp Zoom in on locus 1 x4 CRISPR array Location: 5283-5508 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 5283-5508 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5283-5508 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: OEZY01000042.1 Clostridioides difficile strain WA151 genome assembly, contig: WA151_contig42, whole genome shotgun sequence

⇒Summary: seq-len = 104500 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 49086-59550 bp Zoom in on locus 1 x14 CRISPR array Location: 49086-49973 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 49086-49973 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09725:cas2 Type: universal Location: 50157-50423 bp Gene: cd09722:cas1 Type: universal Location: 50426-51406 bp Gene: pfam01930:cas4 Type: Type-I Location: 51409-51927 bp Gene: COG1203:cas3 Type: Type-I Location: 51975-54296 bp Gene: cd09693:cas5 Type: Type-I Location: 54307-55008 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 55010-55924 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 55926-57776 bp Gene: pfam01881:cas6 Type: other Location: 57782-58519 bp Gene: pfam13280:WYL Type: other Location: 58597-59550 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 49086-49973 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: OEZY01000072.1 Clostridioides difficile strain WA151 genome assembly, contig: WA151_contig72, whole genome shotgun sequence

⇒Summary: seq-len = 15255 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3391-9600 bp Zoom in on locus 1 x17 x9 x5 CRISPR array Location: 3391-4473 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 3391-4473 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 7033-7594 bp Num of repeats: 9 Spacers: s17-s24 CRISPR array Location: 7033-7594 bp Num of repeats: 9 Spacers: s17-s24 CRISPR array Location: 9307-9600 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 9307-9600 bp Num of repeats: 5 Spacers: s25-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3391-4473 bp]: array | spacers
           [Locus range 7033-7594 bp]: array | spacers
           [Locus range 9307-9600 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: OEZY01000032.1 Clostridioides difficile strain WA151 genome assembly, contig: WA151_contig32, whole genome shotgun sequence

⇒Summary: seq-len = 26906 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8408-19123 bp Zoom in on locus 1 x20 Gene: COG0640:csa3 Type: Subtype-I-A Location: 8408-8785 bp Gene: cd09718:cas1 Type: universal Location: 8797-10452 bp CRISPR array Location: 17841-19123 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 17841-19123 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 17841-19123 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: OEZY01000015.1 Clostridioides difficile strain WA151 genome assembly, contig: WA151_contig15, whole genome shotgun sequence

⇒Summary: seq-len = 59321 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46028-53884 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 46028-47137 bp Gene: pfam01881:cas6 Type: other Location: 47396-48133 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 48138-49604 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 49623-50636 bp Gene: cd09693:cas5 Type: Type-I Location: 50652-51449 bp Gene: cd09641:cas3HD Type: Type-I Location: 51476-53884 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)