CRISPRone

CRISPRone report for GCA_900243305.1_SE_881

♦ Seq 1: OEZW01000131.1 Clostridioides difficile strain SE 881 genome assembly, contig: SE_881_contig131, whole genome shotgun sequence

⇒Summary: seq-len = 97017 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62274-70601 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 62274-64682 bp Gene: cd09693:cas5 Type: Type-I Location: 64709-65506 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 65522-66535 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 66554-68020 bp Gene: pfam01881:cas6 Type: other Location: 68025-68762 bp Gene: unk Type: unknown Location: 68863-69039 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 69492-70601 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: OEZW01000140.1 Clostridioides difficile strain SE 881 genome assembly, contig: SE_881_contig140, whole genome shotgun sequence

⇒Summary: seq-len = 40358 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22305-32503 bp Zoom in on locus 1 x12 Gene: COG0640:csa3 Type: Subtype-I-A Location: 22305-22682 bp Gene: cd09718:cas1 Type: universal Location: 22694-24349 bp CRISPR array Location: 31751-32503 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 31751-32503 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31751-32503 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: OEZW01000107.1 Clostridioides difficile strain SE 881 genome assembly, contig: SE_881_contig107, whole genome shotgun sequence

⇒Summary: seq-len = 8614 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1568-2783 bp Zoom in on locus 1 x19 CRISPR array Location: 1568-2783 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1568-2783 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1568-2783 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: OEZW01000087.1 Clostridioides difficile strain SE 881 genome assembly, contig: SE_881_contig87, whole genome shotgun sequence

⇒Summary: seq-len = 27560 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9576-20303 bp Zoom in on locus 1 x18 Gene: pfam13280:WYL Type: other Location: 9576-10529 bp Gene: pfam01881:cas6 Type: other Location: 10607-11344 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11350-13200 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13202-14116 bp Gene: cd09693:cas5 Type: Type-I Location: 14118-14318 bp Gene: cd09693:cas5 Type: Type-I Location: 14355-14819 bp Gene: COG1203:cas3 Type: Type-I Location: 14830-17151 bp Gene: pfam01930:cas4 Type: Type-I Location: 17166-17717 bp Gene: cd09722:cas1 Type: universal Location: 17720-18700 bp Gene: cd09725:cas2 Type: universal Location: 18703-18969 bp CRISPR array Location: 19153-20303 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 19153-20303 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19153-20303 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: OEZW01000145.1 Clostridioides difficile strain SE 881 genome assembly, contig: SE_881_contig145, whole genome shotgun sequence

⇒Summary: seq-len = 32115 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18652-19771 bp Zoom in on locus 1 x3 x6 CRISPR array Location: 18652-18813 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 18652-18813 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 19412-19771 bp Num of repeats: 6 Spacers: s3-s7 CRISPR array Location: 19412-19771 bp Num of repeats: 6 Spacers: s3-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18652-18813 bp]: array | spacers
           [Locus range 19412-19771 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: OEZW01000096.1 Clostridioides difficile strain SE 881 genome assembly, contig: SE_881_contig96, whole genome shotgun sequence

⇒Summary: seq-len = 72424 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45737-46361 bp Zoom in on locus 1 x10 CRISPR array Location: 45737-46361 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 45737-46361 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45737-46361 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: OEZW01000133.1 Clostridioides difficile strain SE 881 genome assembly, contig: SE_881_contig133, whole genome shotgun sequence

⇒Summary: seq-len = 73028 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15359-16436 bp Zoom in on locus 1 x17 CRISPR array Location: 15359-16436 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 15359-16436 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15359-16436 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: OEZW01000015.1 Clostridioides difficile strain SE 881 genome assembly, contig: SE_881_contig15, whole genome shotgun sequence

⇒Summary: seq-len = 61481 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51443-61208 bp Zoom in on locus 1 x12 Gene: cd09725:cas2 Type: universal Location: 51443-51691 bp Gene: cd09722:cas1 Type: universal Location: 51902-52909 bp Gene: pfam01930:cas4 Type: Type-I Location: 52935-53429 bp CRISPR array Location: 53514-54267 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 53514-54267 bp Num of repeats: 12 Spacers: s1-s11 Gene: COG1203:cas3 Type: Type-I Location: 54457-55173 bp Gene: cd09641:cas3HD Type: Type-I Location: 55191-57014 bp Gene: cd09693:cas5 Type: Type-I Location: 57038-57778 bp Gene: pfam05107:cas7b Type: Type-I Location: 57780-58769 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 58762-60501 bp Gene: cd09652:cas6 Type: other Location: 60513-61208 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 53514-54267 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)