CRISPRone

CRISPRone report for GCA_900243325.1_R_11402

♦ Seq 1: OEZX01000175.1 Clostridioides difficile strain R 11402 genome assembly, contig: R_11402_contig175, whole genome shotgun sequence

⇒Summary: seq-len = 27924 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7203-18379 bp Zoom in on locus 1 x25 CRISPR array Location: 7203-8802 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 7203-8802 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 8986-9252 bp Gene: cd09722:cas1 Type: universal Location: 9255-10235 bp Gene: pfam01930:cas4 Type: Type-I Location: 10238-10756 bp Gene: COG1203:cas3 Type: Type-I Location: 10804-13125 bp Gene: cd09693:cas5 Type: Type-I Location: 13136-13837 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13839-14753 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 14755-16605 bp Gene: pfam01881:cas6 Type: other Location: 16611-17348 bp Gene: pfam13280:WYL Type: other Location: 17426-18379 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7203-8802 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: OEZX01000091.1 Clostridioides difficile strain R 11402 genome assembly, contig: R_11402_contig91, whole genome shotgun sequence

⇒Summary: seq-len = 61248 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13460-13751 bp Zoom in on locus 1 x5 CRISPR array Location: 13460-13751 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 13460-13751 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13460-13751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: OEZX01000139.1 Clostridioides difficile strain R 11402 genome assembly, contig: R_11402_contig139, whole genome shotgun sequence

⇒Summary: seq-len = 52390 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6112-6272 bp 2 Locus 2: 42590-44634 bp Zoom in on locus 1 x3 Zoom in on locus 2 CRISPR array Location: 6112-6272 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 6112-6272 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09718:cas1 Type: universal Location: 42590-44245 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 44257-44634 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 6112-6272 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: OEZX01000015.1 Clostridioides difficile strain R 11402 genome assembly, contig: R_11402_contig15, whole genome shotgun sequence

⇒Summary: seq-len = 122750 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3119-3802 bp 2 Locus 2: 111893-122559 bp Zoom in on locus 1 x11 Zoom in on locus 2 x25 CRISPR array Location: 3119-3802 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 3119-3802 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 111893-112183 bp Gene: cd09722:cas1 Type: universal Location: 112394-113401 bp Gene: pfam01930:cas4 Type: Type-I Location: 113427-113921 bp CRISPR array Location: 114006-115617 bp Num of repeats: 25 Spacers: s11-s34 CRISPR array Location: 114006-115617 bp Num of repeats: 25 Spacers: s11-s34 Gene: cd09641:cas3HD Type: Type-I Location: 115807-118365 bp Gene: cd09693:cas5 Type: Type-I Location: 118389-119129 bp Gene: pfam05107:cas7b Type: Type-I Location: 119131-120120 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 120113-121852 bp Gene: cd09652:cas6 Type: other Location: 121864-122559 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3119-3802 bp]: array | spacers
           [Locus range 114006-115617 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: OEZX01000072.1 Clostridioides difficile strain R 11402 genome assembly, contig: R_11402_contig72, whole genome shotgun sequence

⇒Summary: seq-len = 18153 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7817-8771 bp Zoom in on locus 1 x15 CRISPR array Location: 7817-8771 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 7817-8771 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7817-8771 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: OEZX01000064.1 Clostridioides difficile strain R 11402 genome assembly, contig: R_11402_contig64, whole genome shotgun sequence

⇒Summary: seq-len = 12050 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5446-11934 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 5446-7854 bp Gene: cd09693:cas5 Type: Type-I Location: 7881-8678 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 8694-9707 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 9726-11192 bp Gene: pfam01881:cas6 Type: other Location: 11197-11934 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: OEZX01000055.1 Clostridioides difficile strain R 11402 genome assembly, contig: R_11402_contig55, whole genome shotgun sequence

⇒Summary: seq-len = 8596 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1615-2695 bp Zoom in on locus 1 x17 CRISPR array Location: 1615-2695 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 1615-2695 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1615-2695 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)