CRISPRone

CRISPRone report for GCA_900243355.1_RW109

♦ Seq 1: LT969521.1 Pseudomonas aeruginosa isolate RW109 genome assembly, plasmid: 2

⇒Summary: seq-len = 151612 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11928-17400 bp Zoom in on locus 1 Gene: cd09708:DinG Type: Subtype-IV-A Location: 11928-14102 bp Gene: mkCas0159:csf5gr6 Type: Subtype-IV-A Location: 14191-14916 bp Gene: cd09705:csf1gr8 Type: Subtype-IV-A Location: 14945-15700 bp Gene: cd09706:csf2gr7 Type: Subtype-IV-A Location: 15700-16743 bp Gene: cd09707:csf3gr5 Type: Subtype-IV-A Location: 16750-17400 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LT969520.1 Pseudomonas aeruginosa isolate RW109 genome assembly, chromosome: Mainomosome

⇒Summary: seq-len = 7049347 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4575011-4585642 bp Zoom in on locus 1 x11 x6 x6 CRISPR array Location: 4575011-4575649 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 4575011-4575649 bp Num of repeats: 11 Spacers: s1-s10 Gene: pfam09707:cas2 Type: universal Location: 4575714-4576013 bp Gene: COG1518:cas1 Type: universal Location: 4576010-4576612 bp Gene: cd09719:cas1 Type: universal Location: 4576661-4576900 bp Gene: pfam08798:cas6e Type: other Location: 4576927-4577466 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 4577513-4578175 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 4578177-4579319 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 4579329-4579859 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 4579856-4581424 bp Gene: cd09641:cas3HD Type: Type-I Location: 4581427-4584108 bp CRISPR array Location: 4584881-4585214 bp Num of repeats: 6 Spacers: s11-s15 CRISPR array Location: 4584881-4585214 bp Num of repeats: 6 Spacers: s11-s15 CRISPR array Location: 4585309-4585642 bp Num of repeats: 6 Spacers: s16-s20 CRISPR array Location: 4585309-4585642 bp Num of repeats: 6 Spacers: s16-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4575011-4575649 bp]: array | spacers
           [Locus range 4584881-4585214 bp]: array | spacers
           [Locus range 4585309-4585642 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)