CRISPRone

CRISPRone report for GCA_900446965.1_45232_F01

♦ Seq 1: UIGU01000001.1 Clostridioides difficile strain NCTC13747 genome assembly, contig: ERS1092508SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 4180036 bp; # of CRISPR array = 14; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1171776-1173982 bp 2 Locus 2: 1326704-1327853 bp 3 Locus 3: 1539531-1540024 bp 4 Locus 4: 1650345-1650836 bp 5 Locus 5: 1741566-1746440 bp 6 Locus 6: 1884533-1885683 bp 7 Locus 7: 2226342-2226502 bp 8 Locus 8: 2607733-2608349 bp 9 Locus 9: 2771621-2779942 bp 10 Locus 10: 2853225-2853582 bp 11 Locus 11: 3355403-3366540 bp 12 Locus 12: 3588946-3589039 bp Zoom in on locus 1 x6 x2 Zoom in on locus 2 x18 Zoom in on locus 3 x8 Zoom in on locus 4 x8 Zoom in on locus 5 x6 x7 x11 Zoom in on locus 6 x18 Zoom in on locus 7 x3 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x6 Zoom in on locus 11 x25 Zoom in on locus 12 x2 CRISPR array Location: 1171776-1172133 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1171776-1172133 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1173887-1173982 bp Num of repeats: 2 Spacers: s6-s6 CRISPR array Location: 1173887-1173982 bp Num of repeats: 2 Spacers: s6-s6 CRISPR array Location: 1326704-1327853 bp Num of repeats: 18 Spacers: s7-s23 CRISPR array Location: 1326704-1327853 bp Num of repeats: 18 Spacers: s7-s23 CRISPR array Location: 1539531-1540024 bp Num of repeats: 8 Spacers: s24-s30 CRISPR array Location: 1539531-1540024 bp Num of repeats: 8 Spacers: s24-s30 CRISPR array Location: 1650345-1650836 bp Num of repeats: 8 Spacers: s31-s37 CRISPR array Location: 1650345-1650836 bp Num of repeats: 8 Spacers: s31-s37 CRISPR array Location: 1741566-1741924 bp Num of repeats: 6 Spacers: s38-s42 CRISPR array Location: 1741566-1741924 bp Num of repeats: 6 Spacers: s38-s42 CRISPR array Location: 1743627-1744052 bp Num of repeats: 7 Spacers: s43-s48 CRISPR array Location: 1743627-1744052 bp Num of repeats: 7 Spacers: s43-s48 CRISPR array Location: 1745754-1746440 bp Num of repeats: 11 Spacers: s49-s58 CRISPR array Location: 1745754-1746440 bp Num of repeats: 11 Spacers: s49-s58 CRISPR array Location: 1884533-1885683 bp Num of repeats: 18 Spacers: s59-s75 CRISPR array Location: 1884533-1885683 bp Num of repeats: 18 Spacers: s59-s75 CRISPR array Location: 2226342-2226502 bp Num of repeats: 3 Spacers: s76-s77 CRISPR array Location: 2226342-2226502 bp Num of repeats: 3 Spacers: s76-s77 CRISPR array Location: 2607733-2608349 bp Num of repeats: 10 Spacers: s78-s86 CRISPR array Location: 2607733-2608349 bp Num of repeats: 10 Spacers: s78-s86 Gene: cd09641:cas3HD Type: Type-I Location: 2771621-2774029 bp Gene: cd09693:cas5 Type: Type-I Location: 2774056-2774853 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2774869-2775885 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2775905-2777380 bp Gene: pfam01881:cas6 Type: other Location: 2777385-2778122 bp Gene: unk Type: unknown Location: 2778223-2778399 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2778833-2779942 bp CRISPR array Location: 2853225-2853582 bp Num of repeats: 6 Spacers: s87-s91 CRISPR array Location: 2853225-2853582 bp Num of repeats: 6 Spacers: s87-s91 CRISPR array Location: 3355403-3357002 bp Num of repeats: 25 Spacers: s92-s115 CRISPR array Location: 3355403-3357002 bp Num of repeats: 25 Spacers: s92-s115 Gene: cd09725:cas2 Type: universal Location: 3357186-3357452 bp Gene: cd09722:cas1 Type: universal Location: 3357455-3358435 bp Gene: pfam01930:cas4 Type: Type-I Location: 3358438-3358956 bp Gene: COG1203:cas3 Type: Type-I Location: 3359004-3361325 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3361336-3362037 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3362039-3362953 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3362955-3364805 bp Gene: pfam01881:cas6 Type: other Location: 3364811-3365605 bp Gene: pfam13280:WYL Type: other Location: 3365626-3366540 bp CRISPR array Location: 3588946-3589039 bp Num of repeats: 2 Spacers: s116-s116 CRISPR array Location: 3588946-3589039 bp Num of repeats: 2 Spacers: s116-s116 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1171776-1172133 bp]: array | spacers
           [Locus range 1173887-1173982 bp]: array | spacers
           [Locus range 1326704-1327853 bp]: array | spacers
           [Locus range 1539531-1540024 bp]: array | spacers
           [Locus range 1650345-1650836 bp]: array | spacers
           [Locus range 1741566-1741924 bp]: array | spacers
           [Locus range 1743627-1744052 bp]: array | spacers
           [Locus range 1745754-1746440 bp]: array | spacers
           [Locus range 1884533-1885683 bp]: array | spacers
           [Locus range 2226342-2226502 bp]: array | spacers
           [Locus range 2607733-2608349 bp]: array | spacers
           [Locus range 2853225-2853582 bp]: array | spacers
           [Locus range 3355403-3357002 bp]: array | spacers
           [Locus range 3588946-3589039 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)