CRISPRone

CRISPRone report for GCA_900447005.1_45296_B02

♦ Seq 1: UFWA01000001.1 Clostridioides difficile strain NCTC13748 genome assembly, contig: ERS1092510SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 4212927 bp; # of CRISPR array = 11; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1327308-1327471 bp 2 Locus 2: 1536191-1536615 bp 3 Locus 3: 1650277-1650965 bp 4 Locus 4: 1825621-1826967 bp 5 Locus 5: 2137172-2137400 bp 6 Locus 6: 2181794-2183978 bp 7 Locus 7: 2237766-2239504 bp 8 Locus 8: 2543088-2543513 bp 9 Locus 9: 2705933-2713798 bp 10 Locus 10: 2787079-2787173 bp 11 Locus 11: 3288806-3299051 bp Zoom in on locus 1 x3 Zoom in on locus 2 x7 Zoom in on locus 3 x11 Zoom in on locus 4 x21 Zoom in on locus 5 x4 Zoom in on locus 6 x3 x4 Zoom in on locus 7 x27 Zoom in on locus 8 x7 Zoom in on locus 9 Zoom in on locus 10 x2 Zoom in on locus 11 x11 CRISPR array Location: 1327308-1327471 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1327308-1327471 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1536191-1536615 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 1536191-1536615 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 1650277-1650965 bp Num of repeats: 11 Spacers: s9-s18 CRISPR array Location: 1650277-1650965 bp Num of repeats: 11 Spacers: s9-s18 CRISPR array Location: 1825621-1826967 bp Num of repeats: 21 Spacers: s19-s38 CRISPR array Location: 1825621-1826967 bp Num of repeats: 21 Spacers: s19-s38 CRISPR array Location: 2137172-2137400 bp Num of repeats: 4 Spacers: s39-s41 CRISPR array Location: 2137172-2137400 bp Num of repeats: 4 Spacers: s39-s41 CRISPR array Location: 2181794-2181953 bp Num of repeats: 3 Spacers: s42-s43 CRISPR array Location: 2181794-2181953 bp Num of repeats: 3 Spacers: s42-s43 CRISPR array Location: 2183754-2183978 bp Num of repeats: 4 Spacers: s44-s46 CRISPR array Location: 2183754-2183978 bp Num of repeats: 4 Spacers: s44-s46 CRISPR array Location: 2237766-2239504 bp Num of repeats: 27 Spacers: s47-s72 CRISPR array Location: 2237766-2239504 bp Num of repeats: 27 Spacers: s47-s72 CRISPR array Location: 2543088-2543513 bp Num of repeats: 7 Spacers: s73-s78 CRISPR array Location: 2543088-2543513 bp Num of repeats: 7 Spacers: s73-s78 Gene: cd09641:cas3HD Type: Type-I Location: 2705933-2708341 bp Gene: cd09693:cas5 Type: Type-I Location: 2708368-2709165 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2709181-2710194 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2710214-2711689 bp Gene: pfam01881:cas6 Type: other Location: 2711694-2712431 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2712689-2713798 bp CRISPR array Location: 2787079-2787173 bp Num of repeats: 2 Spacers: s79-s79 CRISPR array Location: 2787079-2787173 bp Num of repeats: 2 Spacers: s79-s79 CRISPR array Location: 3288806-3289486 bp Num of repeats: 11 Spacers: s80-s89 CRISPR array Location: 3288806-3289486 bp Num of repeats: 11 Spacers: s80-s89 Gene: cd09725:cas2 Type: universal Location: 3289670-3289936 bp Gene: cd09722:cas1 Type: universal Location: 3289939-3290919 bp Gene: pfam01930:cas4 Type: Type-I Location: 3290922-3291440 bp Gene: COG1203:cas3 Type: Type-I Location: 3291488-3293809 bp Gene: cd09693:cas5 Type: Type-I Location: 3293820-3294521 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3294523-3295437 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3295439-3297316 bp Gene: pfam01881:cas6 Type: other Location: 3297322-3298059 bp Gene: pfam13280:WYL Type: other Location: 3298137-3299051 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1327308-1327471 bp]: array | spacers
           [Locus range 1536191-1536615 bp]: array | spacers
           [Locus range 1650277-1650965 bp]: array | spacers
           [Locus range 1825621-1826967 bp]: array | spacers
           [Locus range 2137172-2137400 bp]: array | spacers
           [Locus range 2181794-2181953 bp]: array | spacers
           [Locus range 2183754-2183978 bp]: array | spacers
           [Locus range 2237766-2239504 bp]: array | spacers
           [Locus range 2543088-2543513 bp]: array | spacers
           [Locus range 2787079-2787173 bp]: array | spacers
           [Locus range 3288806-3289486 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)