CRISPRone

CRISPRone report for GCA_900447055.1_45296_C02

♦ Seq 1: UFWB01000003.1 Clostridioides difficile strain NCTC13749 genome assembly, contig: ERS1092511SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 4142653 bp; # of CRISPR array = 10; # of cas gene = 20  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1417479-1417707 bp 2 Locus 2: 1528032-1528788 bp 3 Locus 3: 1702331-1703683 bp 4 Locus 4: 1991920-1992148 bp 5 Locus 5: 2392539-2393089 bp 6 Locus 6: 2555040-2562905 bp 7 Locus 7: 2638085-2638376 bp 8 Locus 8: 2827269-2844413 bp 9 Locus 9: 3152931-3156544 bp 10 Locus 10: 3213238-3223423 bp 11 Locus 11: 3460875-3460968 bp Zoom in on locus 1 x4 Zoom in on locus 2 x12 Zoom in on locus 3 x21 Zoom in on locus 4 x4 Zoom in on locus 5 x9 Zoom in on locus 6 Zoom in on locus 7 x5 Zoom in on locus 8 Zoom in on locus 9 x13 x8 Zoom in on locus 10 x10 Zoom in on locus 11 x2 CRISPR array Location: 1417479-1417707 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1417479-1417707 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1528032-1528788 bp Num of repeats: 12 Spacers: s4-s14 CRISPR array Location: 1528032-1528788 bp Num of repeats: 12 Spacers: s4-s14 CRISPR array Location: 1702331-1703683 bp Num of repeats: 21 Spacers: s15-s34 CRISPR array Location: 1702331-1703683 bp Num of repeats: 21 Spacers: s15-s34 CRISPR array Location: 1991920-1992148 bp Num of repeats: 4 Spacers: s35-s37 CRISPR array Location: 1991920-1992148 bp Num of repeats: 4 Spacers: s35-s37 CRISPR array Location: 2392539-2393089 bp Num of repeats: 9 Spacers: s38-s45 CRISPR array Location: 2392539-2393089 bp Num of repeats: 9 Spacers: s38-s45 Gene: cd09641:cas3HD Type: Type-I Location: 2555040-2557448 bp Gene: cd09693:cas5 Type: Type-I Location: 2557475-2558272 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2558288-2559301 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2559321-2560796 bp Gene: pfam01881:cas6 Type: other Location: 2560801-2561538 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2561796-2562905 bp CRISPR array Location: 2638085-2638376 bp Num of repeats: 5 Spacers: s46-s49 CRISPR array Location: 2638085-2638376 bp Num of repeats: 5 Spacers: s46-s49 Gene: mkCas0151:cas8b10 Type: Subtype-I-B Location: 2827269-2827829 bp Gene: COG1332:csm5gr7 Type: Subtype-III-A Location: 2827893-2828504 bp Gene: unk Type: unknown Location: 2828616-2829509 bp Gene: pfam00078:RT Type: other Location: 2829759-2831555 bp Gene: unk Type: unknown Location: 2831761-2832021 bp Gene: unk Type: unknown Location: 2832449-2832589 bp Gene: pfam00078:RT Type: other Location: 2832641-2834506 bp Gene: pfam00078:RT Type: other Location: 2842503-2844413 bp CRISPR array Location: 3152931-3153753 bp Num of repeats: 13 Spacers: s50-s61 CRISPR array Location: 3152931-3153753 bp Num of repeats: 13 Spacers: s50-s61 CRISPR array Location: 3156057-3156544 bp Num of repeats: 8 Spacers: s62-s68 CRISPR array Location: 3156057-3156544 bp Num of repeats: 8 Spacers: s62-s68 CRISPR array Location: 3213238-3213858 bp Num of repeats: 10 Spacers: s69-s77 CRISPR array Location: 3213238-3213858 bp Num of repeats: 10 Spacers: s69-s77 Gene: cd09725:cas2 Type: universal Location: 3214042-3214308 bp Gene: cd09722:cas1 Type: universal Location: 3214311-3215291 bp Gene: pfam01930:cas4 Type: Type-I Location: 3215294-3215812 bp Gene: COG1203:cas3 Type: Type-I Location: 3215860-3218181 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3218192-3218893 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3218895-3219809 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3219811-3221688 bp Gene: pfam01881:cas6 Type: other Location: 3221694-3222488 bp Gene: pfam13280:WYL Type: other Location: 3222509-3223423 bp CRISPR array Location: 3460875-3460968 bp Num of repeats: 2 Spacers: s78-s78 CRISPR array Location: 3460875-3460968 bp Num of repeats: 2 Spacers: s78-s78 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1417479-1417707 bp]: array | spacers
           [Locus range 1528032-1528788 bp]: array | spacers
           [Locus range 1702331-1703683 bp]: array | spacers
           [Locus range 1991920-1992148 bp]: array | spacers
           [Locus range 2392539-2393089 bp]: array | spacers
           [Locus range 2638085-2638376 bp]: array | spacers
           [Locus range 3152931-3153753 bp]: array | spacers
           [Locus range 3156057-3156544 bp]: array | spacers
           [Locus range 3213238-3213858 bp]: array | spacers
           [Locus range 3460875-3460968 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)