CRISPRone

CRISPRone report for GCA_900455145.1_43251_E01

♦ Seq 1: UATW01000011.1 Pseudomonas aeruginosa strain NCTC11452 genome assembly, contig: ERS1018589SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 310077 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 268867-270458 bp Zoom in on locus 1 x5 x2 CRISPR array Location: 268867-269134 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 268867-269134 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 270371-270458 bp Num of repeats: 2 Spacers: s5-s5 CRISPR array Location: 270371-270458 bp Num of repeats: 2 Spacers: s5-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 268867-269134 bp]: array | spacers
           [Locus range 270371-270458 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: UATW01000001.1 Pseudomonas aeruginosa strain NCTC11452 genome assembly, contig: ERS1018589SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 3365932 bp; # of CRISPR array = 4; # of cas gene = 11  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1047273-1052436 bp 2 Locus 2: 1449926-1452214 bp 3 Locus 3: 2392154-2403825 bp Zoom in on locus 1 Zoom in on locus 2 x5 x13 Zoom in on locus 3 x21 x20 Gene: pfam00078:RT Type: other Location: 1047273-1048598 bp Gene: pfam00078:RT Type: other Location: 1049192-1050517 bp Gene: pfam00078:RT Type: other Location: 1051111-1052436 bp CRISPR array Location: 1449926-1450194 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1449926-1450194 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1451466-1452214 bp Num of repeats: 13 Spacers: s5-s16 CRISPR array Location: 1451466-1452214 bp Num of repeats: 13 Spacers: s5-s16 CRISPR array Location: 2392154-2393403 bp Num of repeats: 21 Spacers: s17-s36 CRISPR array Location: 2392154-2393403 bp Num of repeats: 21 Spacers: s17-s36 Gene: pfam09707:cas2 Type: universal Location: 2393468-2393767 bp Gene: cd09719:cas1 Type: universal Location: 2393764-2394654 bp Gene: pfam08798:cas6e Type: other Location: 2394681-2395220 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 2395267-2395929 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 2395932-2397074 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 2397084-2397614 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 2397611-2399179 bp Gene: cd09641:cas3HD Type: Type-I Location: 2399182-2401863 bp CRISPR array Location: 2402637-2403825 bp Num of repeats: 20 Spacers: s37-s55 CRISPR array Location: 2402637-2403825 bp Num of repeats: 20 Spacers: s37-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1449926-1450194 bp]: array | spacers
           [Locus range 1451466-1452214 bp]: array | spacers
           [Locus range 2392154-2393403 bp]: array | spacers
           [Locus range 2402637-2403825 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: UATW01000012.1 Pseudomonas aeruginosa strain NCTC11452 genome assembly, contig: ERS1018589SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 381704 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 196078-196645 bp Zoom in on locus 1 x10 CRISPR array Location: 196078-196645 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 196078-196645 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 196078-196645 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: UATW01000010.1 Pseudomonas aeruginosa strain NCTC11452 genome assembly, contig: ERS1018589SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 858291 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 410742-411190 bp Zoom in on locus 1 x8 CRISPR array Location: 410742-411190 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 410742-411190 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 410742-411190 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)