CRISPRone

CRISPRone report for GCA_900455295.1_44858_D01

♦ Seq 1: UGUN01000002.1 Pseudomonas aeruginosa strain NCTC7244 genome assembly, contig: ERS1068187SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 1357490 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1057558-1058305 bp Zoom in on locus 1 x13 CRISPR array Location: 1057558-1058305 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 1057558-1058305 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1057558-1058305 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: UGUN01000003.1 Pseudomonas aeruginosa strain NCTC7244 genome assembly, contig: ERS1068187SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 4994002 bp; # of CRISPR array = 4; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 262093-271336 bp 2 Locus 2: 1638028-1648601 bp Zoom in on locus 1 x9 x3 Zoom in on locus 2 x12 x11 CRISPR array Location: 262093-262601 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 262093-262601 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09739:cas6f Type: other Location: 262785-263348 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 263352-264380 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 264391-265374 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 265361-266665 bp Gene: COG1203:cas3 Type: Type-I Location: 266723-269953 bp Gene: cd09718:cas1 Type: universal Location: 269950-270924 bp CRISPR array Location: 271189-271336 bp Num of repeats: 3 Spacers: s9-s10 CRISPR array Location: 271189-271336 bp Num of repeats: 3 Spacers: s9-s10 CRISPR array Location: 1638028-1638727 bp Num of repeats: 12 Spacers: s11-s21 CRISPR array Location: 1638028-1638727 bp Num of repeats: 12 Spacers: s11-s21 Gene: pfam09707:cas2 Type: universal Location: 1638792-1639091 bp Gene: cd09719:cas1 Type: universal Location: 1639088-1639978 bp Gene: pfam08798:cas6e Type: other Location: 1640005-1640544 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 1640591-1641253 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 1641255-1642397 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 1642407-1642937 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 1642934-1644502 bp Gene: cd09641:cas3HD Type: Type-I Location: 1644505-1647186 bp CRISPR array Location: 1647962-1648601 bp Num of repeats: 11 Spacers: s22-s31 CRISPR array Location: 1647962-1648601 bp Num of repeats: 11 Spacers: s22-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 262093-262601 bp]: array | spacers
           [Locus range 271189-271336 bp]: array | spacers
           [Locus range 1638028-1638727 bp]: array | spacers
           [Locus range 1647962-1648601 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)