CRISPRone

CRISPRone report for GCA_900455355.1_43366_F01

♦ Seq 1: UGUK01000002.1 Pseudomonas aeruginosa strain NCTC10782 genome assembly, contig: ERS1022027SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 3747786 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 393890-404811 bp Zoom in on locus 1 x29 x11 CRISPR array Location: 393890-395600 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 393890-395600 bp Num of repeats: 29 Spacers: s1-s28 Gene: cd09718:cas1 Type: universal Location: 395860-396834 bp Gene: COG1203:cas3 Type: Type-I Location: 396831-400061 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 400119-401423 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 401410-402393 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 402404-403432 bp Gene: cd09739:cas6f Type: other Location: 403436-403999 bp CRISPR array Location: 404184-404811 bp Num of repeats: 11 Spacers: s29-s38 CRISPR array Location: 404184-404811 bp Num of repeats: 11 Spacers: s29-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 393890-395600 bp]: array | spacers
           [Locus range 404184-404811 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: UGUK01000001.1 Pseudomonas aeruginosa strain NCTC10782 genome assembly, contig: ERS1022027SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 917007 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 224351-232612 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 224351-226717 bp Gene: unk Type: unknown Location: 227110-227757 bp Gene: unk Type: unknown Location: 227823-228110 bp Gene: COG2378:WYL Type: other Location: 228241-229083 bp Gene: pfam13280:WYL Type: other Location: 229825-230841 bp Gene: mkCas0115:csx3 Type: other Location: 231002-232612 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)