CRISPRone

CRISPRone report for GCA_900478745.1_32018_A01

♦ Seq 1: LS483497.1 Pseudomonas aeruginosa strain NCTC9433 genome assembly, chromosome: 1

⇒Summary: seq-len = 6440688 bp; # of CRISPR array = 4; # of cas gene = 15  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1495262-1496070 bp 2 Locus 2: 2810969-2821297 bp 3 Locus 3: 4477137-4487283 bp Zoom in on locus 1 x14 Zoom in on locus 2 x17 x13 Zoom in on locus 3 x36 CRISPR array Location: 1495262-1496070 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 1495262-1496070 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 2810969-2811957 bp Num of repeats: 17 Spacers: s14-s29 CRISPR array Location: 2810969-2811957 bp Num of repeats: 17 Spacers: s14-s29 Gene: cd09739:cas6f Type: other Location: 2812140-2812703 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2812707-2813735 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2813746-2814729 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2814716-2816020 bp Gene: COG1203:cas3 Type: Type-I Location: 2816078-2819317 bp Gene: cd09718:cas1 Type: universal Location: 2819314-2820288 bp CRISPR array Location: 2820550-2821297 bp Num of repeats: 13 Spacers: s30-s41 CRISPR array Location: 2820550-2821297 bp Num of repeats: 13 Spacers: s30-s41 CRISPR array Location: 4477137-4479494 bp Num of repeats: 36 Spacers: s42-s76 CRISPR array Location: 4477137-4479494 bp Num of repeats: 36 Spacers: s42-s76 Gene: cd09725:cas2 Type: universal Location: 4479676-4479966 bp Gene: cd09721:cas1 Type: universal Location: 4479976-4481016 bp Gene: pfam01930:cas4 Type: Type-I Location: 4481020-4481652 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 4481671-4482540 bp Gene: pfam09709:cas8c Type: Subtype-I-C Location: 4482537-4483385 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 4483400-4484329 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 4484326-4485000 bp Gene: COG1203:cas3 Type: Type-I Location: 4485050-4486453 bp Gene: cd09641:cas3HD Type: Type-I Location: 4486459-4487283 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1495262-1496070 bp]: array | spacers
           [Locus range 2810969-2811957 bp]: array | spacers
           [Locus range 2820550-2821297 bp]: array | spacers
           [Locus range 4477137-4479494 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)