CRISPRone

CRISPRone report for GCA_900608035.1_paerg007

♦ Seq 1: UWXD01000001.1 Pseudomonas aeruginosa isolate paerg007 genome assembly, contig: paerg007-contig000, whole genome shotgun sequence

⇒Summary: seq-len = 6306280 bp; # of CRISPR array = 4; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1110887-1111095 bp 2 Locus 2: 2724139-2734173 bp 3 Locus 3: 3701480-3703682 bp 4 Locus 4: 5976829-5977516 bp Zoom in on locus 1 x4 Zoom in on locus 2 x13 x12 Zoom in on locus 3 Zoom in on locus 4 x12 CRISPR array Location: 1110887-1111095 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1110887-1111095 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2724139-2724887 bp Num of repeats: 13 Spacers: s4-s15 CRISPR array Location: 2724139-2724887 bp Num of repeats: 13 Spacers: s4-s15 Gene: cd09739:cas6f Type: other Location: 2725060-2725623 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2725627-2726655 bp Gene: pfam09614:cas5f Type: Subtype-I-F Location: 2726666-2727649 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2727636-2728940 bp Gene: COG1203:cas3 Type: Type-I Location: 2728998-2732234 bp Gene: cd09718:cas1 Type: universal Location: 2732231-2733205 bp CRISPR array Location: 2733486-2734173 bp Num of repeats: 12 Spacers: s16-s26 CRISPR array Location: 2733486-2734173 bp Num of repeats: 12 Spacers: s16-s26 Gene: COG2378:WYL Type: other Location: 3701480-3702451 bp Gene: unk Type: unknown Location: 3702561-3703247 bp Gene: cd09693:cas5 Type: Type-I Location: 3703275-3703682 bp CRISPR array Location: 5976829-5977516 bp Num of repeats: 12 Spacers: s27-s37 CRISPR array Location: 5976829-5977516 bp Num of repeats: 12 Spacers: s27-s37 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1110887-1111095 bp]: array | spacers
           [Locus range 2724139-2724887 bp]: array | spacers
           [Locus range 2733486-2734173 bp]: array | spacers
           [Locus range 5976829-5977516 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)