CRISPRone

CRISPRone report for GCA_900624785.1_82A12

♦ Seq 1: UYXF01000005.1 Bacteroides fragilis YCH46 isolate Bacteroides fragilis 82A12 genome assembly, contig: NODE_5_length_300005_cov_19.1763, whole genome shotgun sequence

⇒Summary: seq-len = 300005 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 239868-256748 bp Zoom in on locus 1 x47 CRISPR array Location: 239868-243123 bp Num of repeats: 47 Spacers: s1-s46 CRISPR array Location: 239868-243123 bp Num of repeats: 47 Spacers: s1-s46 Gene: cd09725:cas2 Type: universal Location: 243571-243861 bp Gene: cd09634:cas1 Type: universal Location: 243855-246125 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 246145-247095 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 247092-247502 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 247515-248351 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 248371-249510 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 249503-251305 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 251310-252719 bp Gene: unk Type: unknown Location: 252733-253212 bp Gene: cash17:cash17 Type: Type- Location: 253209-254636 bp Gene: unk Type: unknown Location: 254681-255460 bp Gene: unk Type: unknown Location: 255436-256062 bp Gene: cls000004:cas6 Type: other Location: 256080-256748 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 239868-243123 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: UYXF01000009.1 Bacteroides fragilis YCH46 isolate Bacteroides fragilis 82A12 genome assembly, contig: NODE_9_length_162463_cov_21.7732, whole genome shotgun sequence

⇒Summary: seq-len = 162463 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89285-92898 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 89285-89953 bp Gene: unk Type: unknown Location: 89956-90729 bp Gene: unk Type: unknown Location: 90737-92002 bp Gene: pfam13280:WYL Type: other Location: 91999-92898 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: UYXF01000003.1 Bacteroides fragilis YCH46 isolate Bacteroides fragilis 82A12 genome assembly, contig: NODE_3_length_322123_cov_17.5926, whole genome shotgun sequence

⇒Summary: seq-len = 322123 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 100126-109107 bp Zoom in on locus 1 x18 CRISPR array Location: 100126-101246 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 100126-101246 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09725:cas2 Type: universal Location: 101459-101722 bp Gene: cd09722:cas1 Type: universal Location: 101725-102738 bp Gene: pfam01930:cas4 Type: Type-I Location: 102735-103247 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 103312-104370 bp Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 104383-105708 bp Gene: COG1203:cas3 Type: Type-I Location: 105712-107871 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 107861-108424 bp Gene: cd09652:cas6 Type: other Location: 108436-109107 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 100126-101246 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)