CRISPRone

CRISPRone report for GCA_900631905.1_14230833GM

♦ Seq 1: UZVZ01000029.1 Clostridioides difficile isolate 14230833GM genome assembly, contig: CDMM16000029, whole genome shotgun sequence

⇒Summary: seq-len = 141165 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113430-124612 bp Zoom in on locus 1 x25 CRISPR array Location: 113430-115047 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 113430-115047 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114276-114509 bp Gene: unk Type: unknown Location: 114731-114898 bp Gene: cd09725:cas2 Type: universal Location: 115231-115497 bp Gene: cd09722:cas1 Type: universal Location: 115500-116480 bp Gene: pfam01930:cas4 Type: Type-I Location: 116483-117001 bp Gene: COG1203:cas3 Type: Type-I Location: 117049-119370 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119381-120082 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120084-120998 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 121000-122877 bp Gene: pfam01881:cas6 Type: other Location: 122883-123677 bp Gene: pfam13280:WYL Type: other Location: 123698-124612 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113430-115047 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: UZVZ01000025.1 Clostridioides difficile isolate 14230833GM genome assembly, contig: CDMM16000025, whole genome shotgun sequence

⇒Summary: seq-len = 236897 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45377-53252 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45377-47785 bp Gene: cd09693:cas5 Type: Type-I Location: 47812-48618 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48634-49647 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49667-51142 bp Gene: pfam01881:cas6 Type: other Location: 51147-51884 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 52143-53252 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: UZVZ01000017.1 Clostridioides difficile isolate 14230833GM genome assembly, contig: CDMM16000017, whole genome shotgun sequence

⇒Summary: seq-len = 10915 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 844-1802 bp Zoom in on locus 1 x15 CRISPR array Location: 844-1802 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 844-1802 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 844-1802 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: UZVZ01000021.1 Clostridioides difficile isolate 14230833GM genome assembly, contig: CDMM16000021, whole genome shotgun sequence

⇒Summary: seq-len = 270447 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61393-62217 bp Zoom in on locus 1 x13 CRISPR array Location: 61393-62217 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 61393-62217 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61393-62217 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: UZVZ01000018.1 Clostridioides difficile isolate 14230833GM genome assembly, contig: CDMM16000018, whole genome shotgun sequence

⇒Summary: seq-len = 388627 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 309526-310213 bp Zoom in on locus 1 x11 CRISPR array Location: 309526-310213 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 309526-310213 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 309526-310213 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: UZVZ01000023.1 Clostridioides difficile isolate 14230833GM genome assembly, contig: CDMM16000023, whole genome shotgun sequence

⇒Summary: seq-len = 417452 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 75675-75769 bp 2 Locus 2: 117390-118015 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 75675-75769 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 75675-75769 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 117390-118015 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 117390-118015 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 75675-75769 bp]: array | spacers
           [Locus range 117390-118015 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: UZVZ01000019.1 Clostridioides difficile isolate 14230833GM genome assembly, contig: CDMM16000019, whole genome shotgun sequence

⇒Summary: seq-len = 149252 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30733-31027 bp 2 Locus 2: 123410-125921 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 CRISPR array Location: 30733-31027 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 30733-31027 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 123410-123767 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 123410-123767 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 125631-125921 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 125631-125921 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30733-31027 bp]: array | spacers
           [Locus range 123410-123767 bp]: array | spacers
           [Locus range 125631-125921 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: UZVZ01000031.1 Clostridioides difficile isolate 14230833GM genome assembly, contig: CDMM16000031, whole genome shotgun sequence

⇒Summary: seq-len = 425142 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69217-75749 bp Zoom in on locus 1 x10 CRISPR array Location: 69217-69839 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69217-69839 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70092-72077 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72088-73158 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73179-74345 bp Gene: pfam01881:cas6 Type: other Location: 74347-75111 bp Gene: cd09693:cas5 Type: Type-I Location: 75102-75749 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69217-69839 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)