CRISPRone

CRISPRone report for GCA_900631925.1_11009338GM

♦ Seq 1: UZWB01000026.1 Clostridioides difficile isolate 11009338GM genome assembly, contig: CDMM05000026, whole genome shotgun sequence

⇒Summary: seq-len = 20966 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7737-10470 bp Zoom in on locus 1 x8 x9 CRISPR array Location: 7737-8236 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 7737-8236 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 9919-10470 bp Num of repeats: 9 Spacers: s8-s15 CRISPR array Location: 9919-10470 bp Num of repeats: 9 Spacers: s8-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7737-8236 bp]: array | spacers
           [Locus range 9919-10470 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: UZWB01000021.1 Clostridioides difficile isolate 11009338GM genome assembly, contig: CDMM05000021, whole genome shotgun sequence

⇒Summary: seq-len = 110232 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30734-31028 bp Zoom in on locus 1 x5 CRISPR array Location: 30734-31028 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 30734-31028 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30734-31028 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: UZWB01000035.1 Clostridioides difficile isolate 11009338GM genome assembly, contig: CDMM05000035, whole genome shotgun sequence

⇒Summary: seq-len = 141339 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113426-124475 bp Zoom in on locus 1 x23 CRISPR array Location: 113426-114910 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 113426-114910 bp Num of repeats: 23 Spacers: s1-s22 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114272-114505 bp Gene: unk Type: unknown Location: 114727-114894 bp Gene: cd09725:cas2 Type: universal Location: 115094-115360 bp Gene: cd09722:cas1 Type: universal Location: 115363-116343 bp Gene: pfam01930:cas4 Type: Type-I Location: 116346-116864 bp Gene: COG1203:cas3 Type: Type-I Location: 116912-119233 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119244-119945 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 119947-120861 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 120863-122740 bp Gene: pfam01881:cas6 Type: other Location: 122746-123540 bp Gene: pfam13280:WYL Type: other Location: 123561-124475 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113426-114910 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: UZWB01000031.1 Clostridioides difficile isolate 11009338GM genome assembly, contig: CDMM05000031, whole genome shotgun sequence

⇒Summary: seq-len = 237216 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45377-53252 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45377-47785 bp Gene: cd09693:cas5 Type: Type-I Location: 47812-48618 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48634-49647 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49667-51142 bp Gene: pfam01881:cas6 Type: other Location: 51147-51884 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 52143-53252 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: UZWB01000029.1 Clostridioides difficile isolate 11009338GM genome assembly, contig: CDMM05000029, whole genome shotgun sequence

⇒Summary: seq-len = 712613 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61738-62823 bp 2 Locus 2: 370703-370797 bp 3 Locus 3: 412418-413043 bp Zoom in on locus 1 x17 Zoom in on locus 2 x2 Zoom in on locus 3 x10 CRISPR array Location: 61738-62823 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 61738-62823 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 370703-370797 bp Num of repeats: 2 Spacers: s17-s17 CRISPR array Location: 370703-370797 bp Num of repeats: 2 Spacers: s17-s17 CRISPR array Location: 412418-413043 bp Num of repeats: 10 Spacers: s18-s26 CRISPR array Location: 412418-413043 bp Num of repeats: 10 Spacers: s18-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61738-62823 bp]: array | spacers
           [Locus range 370703-370797 bp]: array | spacers
           [Locus range 412418-413043 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: UZWB01000020.1 Clostridioides difficile isolate 11009338GM genome assembly, contig: CDMM05000020, whole genome shotgun sequence

⇒Summary: seq-len = 289845 bp; # of CRISPR array = 2; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 844-1798 bp 2 Locus 2: 210186-210873 bp 3 Locus 3: 286820-289843 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 CRISPR array Location: 844-1798 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 844-1798 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 210186-210873 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 210186-210873 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 286820-287419 bp Gene: unk Type: unknown Location: 287587-288054 bp Gene: COG2378:WYL Type: other Location: 288159-289076 bp Gene: cas14:cas14 Type: Type-V Location: 289715-289843 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 844-1798 bp]: array | spacers
           [Locus range 210186-210873 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: UZWB01000037.1 Clostridioides difficile isolate 11009338GM genome assembly, contig: CDMM05000037, whole genome shotgun sequence

⇒Summary: seq-len = 259492 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69303-75638 bp Zoom in on locus 1 x7 CRISPR array Location: 69303-69728 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 69303-69728 bp Num of repeats: 7 Spacers: s1-s6 Gene: COG1203:cas3 Type: Type-I Location: 69981-71966 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 71977-73047 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73068-74234 bp Gene: pfam01881:cas6 Type: other Location: 74236-75000 bp Gene: cd09693:cas5 Type: Type-I Location: 74991-75638 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69303-69728 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)