CRISPRone

CRISPRone report for GCA_900683845.1_4880_3_10

♦ Seq 1: CAACYL010000007.1 Clostridioides difficile strain Bel007 genome assembly, contig: ERS005826SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 140843 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61789-73442 bp Zoom in on locus 1 x40 Gene: cd09725:cas2 Type: universal Location: 61789-62079 bp Gene: cd09722:cas1 Type: universal Location: 62290-63297 bp Gene: pfam01930:cas4 Type: Type-I Location: 63323-63817 bp CRISPR array Location: 63902-66500 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 63902-66500 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 64525-64653 bp Gene: cd09641:cas3HD Type: Type-I Location: 66690-69248 bp Gene: cd09693:cas5 Type: Type-I Location: 69272-70012 bp Gene: pfam05107:cas7b Type: Type-I Location: 70014-71003 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70996-72735 bp Gene: cd09652:cas6 Type: other Location: 72747-73442 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63902-66500 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACYL010000025.1 Clostridioides difficile strain Bel007 genome assembly, contig: ERS005826SCcontig000025, whole genome shotgun sequence

⇒Summary: seq-len = 62353 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40840-52538 bp Zoom in on locus 1 x33 CRISPR array Location: 40840-42961 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 40840-42961 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 43145-43411 bp Gene: cd09722:cas1 Type: universal Location: 43414-44394 bp Gene: pfam01930:cas4 Type: Type-I Location: 44397-44915 bp Gene: COG1203:cas3 Type: Type-I Location: 44963-47284 bp Gene: cd09693:cas5 Type: Type-I Location: 47295-47996 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 47998-48912 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 48914-50764 bp Gene: pfam01881:cas6 Type: other Location: 50770-51507 bp Gene: pfam13280:WYL Type: other Location: 51585-52538 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 40840-42961 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACYL010000001.1 Clostridioides difficile strain Bel007 genome assembly, contig: ERS005826SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 422524 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88680-97007 bp 2 Locus 2: 149610-160563 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88680-89789 bp Gene: unk Type: unknown Location: 90242-90418 bp Gene: pfam01881:cas6 Type: other Location: 90519-91256 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91261-92727 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92746-93759 bp Gene: cd09693:cas5 Type: Type-I Location: 93775-94572 bp Gene: cd09641:cas3HD Type: Type-I Location: 94599-97007 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149610-150095 bp Gene: cd06127:DEDDh Type: Type-I Location: 156910-157947 bp Gene: unk Type: unknown Location: 158311-158817 bp Gene: unk Type: unknown Location: 159230-159898 bp Gene: cd06127:DEDDh Type: Type-I Location: 160057-160563 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACYL010000019.1 Clostridioides difficile strain Bel007 genome assembly, contig: ERS005826SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 75978 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73247-74395 bp Zoom in on locus 1 x18 CRISPR array Location: 73247-74395 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 73247-74395 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73247-74395 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACYL010000002.1 Clostridioides difficile strain Bel007 genome assembly, contig: ERS005826SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 323717 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 227262-239572 bp 2 Locus 2: 277075-277888 bp Zoom in on locus 1 x44 Zoom in on locus 2 x13 CRISPR array Location: 227262-230126 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 227262-230126 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 237528-239183 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 239195-239572 bp CRISPR array Location: 277075-277888 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 277075-277888 bp Num of repeats: 13 Spacers: s44-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 227262-230126 bp]: array | spacers
           [Locus range 277075-277888 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAACYL010000010.1 Clostridioides difficile strain Bel007 genome assembly, contig: ERS005826SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 125521 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20813-21440 bp Zoom in on locus 1 x10 CRISPR array Location: 20813-21440 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 20813-21440 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20813-21440 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)