CRISPRone

CRISPRone report for GCA_900683865.1_4880_3_3

♦ Seq 1: CAACYM010000020.1 Clostridioides difficile strain Bel011 genome assembly, contig: ERS005819SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 75978 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1584-2733 bp Zoom in on locus 1 x18 CRISPR array Location: 1584-2733 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1584-2733 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1584-2733 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACYM010000026.1 Clostridioides difficile strain Bel011 genome assembly, contig: ERS005819SCcontig000026, whole genome shotgun sequence

⇒Summary: seq-len = 62364 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40851-52549 bp Zoom in on locus 1 x33 CRISPR array Location: 40851-42972 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 40851-42972 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 43156-43422 bp Gene: cd09722:cas1 Type: universal Location: 43425-44405 bp Gene: pfam01930:cas4 Type: Type-I Location: 44408-44926 bp Gene: COG1203:cas3 Type: Type-I Location: 44974-47295 bp Gene: cd09693:cas5 Type: Type-I Location: 47306-48007 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48009-48923 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 48925-50775 bp Gene: pfam01881:cas6 Type: other Location: 50781-51518 bp Gene: pfam13280:WYL Type: other Location: 51596-52549 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 40851-42972 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACYM010000012.1 Clostridioides difficile strain Bel011 genome assembly, contig: ERS005819SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 125509 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20813-21440 bp Zoom in on locus 1 x10 CRISPR array Location: 20813-21440 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 20813-21440 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20813-21440 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACYM010000001.1 Clostridioides difficile strain Bel011 genome assembly, contig: ERS005819SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 424832 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 264270-275223 bp 2 Locus 2: 327826-336153 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 264270-264776 bp Gene: unk Type: unknown Location: 264935-265603 bp Gene: unk Type: unknown Location: 266016-266522 bp Gene: cd06127:DEDDh Type: Type-I Location: 266886-267923 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 274738-275223 bp Gene: cd09641:cas3HD Type: Type-I Location: 327826-330234 bp Gene: cd09693:cas5 Type: Type-I Location: 330261-331058 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 331074-332087 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 332106-333572 bp Gene: pfam01881:cas6 Type: other Location: 333577-334314 bp Gene: unk Type: unknown Location: 334415-334591 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 335044-336153 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACYM010000002.1 Clostridioides difficile strain Bel011 genome assembly, contig: ERS005819SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 251694 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 84510-85324 bp 2 Locus 2: 122826-135137 bp Zoom in on locus 1 x13 Zoom in on locus 2 x44 CRISPR array Location: 84510-85324 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 84510-85324 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG0640:csa3 Type: Subtype-I-A Location: 122826-123203 bp Gene: cd09718:cas1 Type: universal Location: 123215-124870 bp CRISPR array Location: 132272-135137 bp Num of repeats: 44 Spacers: s13-s55 CRISPR array Location: 132272-135137 bp Num of repeats: 44 Spacers: s13-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 84510-85324 bp]: array | spacers
           [Locus range 132272-135137 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAACYM010000008.1 Clostridioides difficile strain Bel011 genome assembly, contig: ERS005819SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 140820 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61766-73419 bp Zoom in on locus 1 x40 Gene: cd09725:cas2 Type: universal Location: 61766-62056 bp Gene: cd09722:cas1 Type: universal Location: 62267-63274 bp Gene: pfam01930:cas4 Type: Type-I Location: 63300-63794 bp CRISPR array Location: 63879-66477 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 63879-66477 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 64502-64630 bp Gene: cd09641:cas3HD Type: Type-I Location: 66667-69225 bp Gene: cd09693:cas5 Type: Type-I Location: 69249-69989 bp Gene: pfam05107:cas7b Type: Type-I Location: 69991-70980 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70973-72712 bp Gene: cd09652:cas6 Type: other Location: 72724-73419 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63879-66477 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)