CRISPRone

CRISPRone report for GCA_900683915.1_4880_5_1

♦ Seq 1: CAACYO010000002.1 Clostridioides difficile strain Bel012 genome assembly, contig: ERS005830SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 354176 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 116564-128808 bp 2 Locus 2: 166311-167124 bp 3 Locus 3: 275122-286775 bp Zoom in on locus 1 x43 Zoom in on locus 2 x13 Zoom in on locus 3 x40 CRISPR array Location: 116564-119362 bp Num of repeats: 43 Spacers: s1-s42 CRISPR array Location: 116564-119362 bp Num of repeats: 43 Spacers: s1-s42 Gene: cd09718:cas1 Type: universal Location: 126764-128419 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 128431-128808 bp CRISPR array Location: 166311-167124 bp Num of repeats: 13 Spacers: s43-s54 CRISPR array Location: 166311-167124 bp Num of repeats: 13 Spacers: s43-s54 Gene: cd09725:cas2 Type: universal Location: 275122-275412 bp Gene: cd09722:cas1 Type: universal Location: 275623-276630 bp Gene: pfam01930:cas4 Type: Type-I Location: 276656-277150 bp CRISPR array Location: 277235-279833 bp Num of repeats: 40 Spacers: s55-s93 CRISPR array Location: 277235-279833 bp Num of repeats: 40 Spacers: s55-s93 Gene: unk Type: unknown Location: 277858-277986 bp Gene: cd09641:cas3HD Type: Type-I Location: 280023-282581 bp Gene: cd09693:cas5 Type: Type-I Location: 282605-283345 bp Gene: pfam05107:cas7b Type: Type-I Location: 283347-284336 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 284329-286068 bp Gene: cd09652:cas6 Type: other Location: 286080-286775 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 116564-119362 bp]: array | spacers
           [Locus range 166311-167124 bp]: array | spacers
           [Locus range 277235-279833 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACYO010000001.1 Clostridioides difficile strain Bel012 genome assembly, contig: ERS005830SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 422552 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88680-97007 bp 2 Locus 2: 149610-160563 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88680-89789 bp Gene: unk Type: unknown Location: 90242-90418 bp Gene: pfam01881:cas6 Type: other Location: 90519-91256 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91261-92727 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92746-93759 bp Gene: cd09693:cas5 Type: Type-I Location: 93775-94572 bp Gene: cd09641:cas3HD Type: Type-I Location: 94599-97007 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149610-150095 bp Gene: cd06127:DEDDh Type: Type-I Location: 156910-157947 bp Gene: unk Type: unknown Location: 158311-158817 bp Gene: unk Type: unknown Location: 159230-159898 bp Gene: cd06127:DEDDh Type: Type-I Location: 160057-160563 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACYO010000010.1 Clostridioides difficile strain Bel012 genome assembly, contig: ERS005830SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 126493 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 105086-105712 bp Zoom in on locus 1 x10 CRISPR array Location: 105086-105712 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 105086-105712 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 105086-105712 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACYO010000021.1 Clostridioides difficile strain Bel012 genome assembly, contig: ERS005830SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 76062 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73313-74461 bp Zoom in on locus 1 x18 CRISPR array Location: 73313-74461 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 73313-74461 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73313-74461 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACYO010000027.1 Clostridioides difficile strain Bel012 genome assembly, contig: ERS005830SCcontig000027, whole genome shotgun sequence

⇒Summary: seq-len = 62358 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40845-52543 bp Zoom in on locus 1 x33 CRISPR array Location: 40845-42966 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 40845-42966 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 43150-43416 bp Gene: cd09722:cas1 Type: universal Location: 43419-44399 bp Gene: pfam01930:cas4 Type: Type-I Location: 44402-44920 bp Gene: COG1203:cas3 Type: Type-I Location: 44968-47289 bp Gene: cd09693:cas5 Type: Type-I Location: 47300-48001 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48003-48917 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 48919-50769 bp Gene: pfam01881:cas6 Type: other Location: 50775-51512 bp Gene: pfam13280:WYL Type: other Location: 51590-52543 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 40845-42966 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)