CRISPRone

CRISPRone report for GCA_900683945.1_4880_5_2

♦ Seq 1: CAACYR010000012.1 Clostridioides difficile strain Bel021 genome assembly, contig: ERS005832SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 125302 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88680-97007 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88680-89789 bp Gene: unk Type: unknown Location: 90242-90418 bp Gene: pfam01881:cas6 Type: other Location: 90519-91256 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91261-92727 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92746-93759 bp Gene: cd09693:cas5 Type: Type-I Location: 93775-94572 bp Gene: cd09641:cas3HD Type: Type-I Location: 94599-97007 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACYR010000026.1 Clostridioides difficile strain Bel021 genome assembly, contig: ERS005832SCcontig000026, whole genome shotgun sequence

⇒Summary: seq-len = 62485 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40842-52670 bp Zoom in on locus 1 x35 CRISPR array Location: 40842-43093 bp Num of repeats: 35 Spacers: s1-s34 CRISPR array Location: 40842-43093 bp Num of repeats: 35 Spacers: s1-s34 Gene: cd09725:cas2 Type: universal Location: 43277-43543 bp Gene: cd09722:cas1 Type: universal Location: 43546-44526 bp Gene: pfam01930:cas4 Type: Type-I Location: 44529-45047 bp Gene: COG1203:cas3 Type: Type-I Location: 45095-47416 bp Gene: cd09693:cas5 Type: Type-I Location: 47427-48128 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48130-49044 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 49046-50896 bp Gene: pfam01881:cas6 Type: other Location: 50902-51639 bp Gene: pfam13280:WYL Type: other Location: 51717-52670 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 40842-43093 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACYR010000001.1 Clostridioides difficile strain Bel021 genome assembly, contig: ERS005832SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 353241 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67402-77868 bp 2 Locus 2: 185857-186673 bp 3 Locus 3: 224175-236683 bp Zoom in on locus 1 x22 Zoom in on locus 2 x13 Zoom in on locus 3 x47 Gene: cd09652:cas6 Type: other Location: 67402-68097 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68109-69848 bp Gene: pfam05107:cas7b Type: Type-I Location: 69841-70830 bp Gene: cd09693:cas5 Type: Type-I Location: 70832-71572 bp Gene: cd09641:cas3HD Type: Type-I Location: 71596-74154 bp CRISPR array Location: 74344-75756 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 74344-75756 bp Num of repeats: 22 Spacers: s1-s21 Gene: pfam01930:cas4 Type: Type-I Location: 75840-76334 bp Gene: cd09722:cas1 Type: universal Location: 76360-77367 bp Gene: cd09725:cas2 Type: universal Location: 77578-77868 bp CRISPR array Location: 185857-186673 bp Num of repeats: 13 Spacers: s22-s33 CRISPR array Location: 185857-186673 bp Num of repeats: 13 Spacers: s22-s33 Gene: COG0640:csa3 Type: Subtype-I-A Location: 224175-224552 bp Gene: cd09718:cas1 Type: universal Location: 224564-226219 bp CRISPR array Location: 233621-236683 bp Num of repeats: 47 Spacers: s34-s79 CRISPR array Location: 233621-236683 bp Num of repeats: 47 Spacers: s34-s79 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74344-75756 bp]: array | spacers
           [Locus range 185857-186673 bp]: array | spacers
           [Locus range 233621-236683 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACYR010000019.1 Clostridioides difficile strain Bel021 genome assembly, contig: ERS005832SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 76261 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1602-2950 bp Zoom in on locus 1 x21 CRISPR array Location: 1602-2950 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 1602-2950 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1602-2950 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACYR010000011.1 Clostridioides difficile strain Bel021 genome assembly, contig: ERS005832SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 125521 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20813-21440 bp Zoom in on locus 1 x10 CRISPR array Location: 20813-21440 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 20813-21440 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20813-21440 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)