CRISPRone

CRISPRone report for GCA_900684005.1_4880_7_1

♦ Seq 1: CAACYS010000010.1 Clostridioides difficile strain Lew001 genome assembly, contig: ERS007218SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 163578 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24426-25045 bp 2 Locus 2: 134305-134465 bp Zoom in on locus 1 x10 Zoom in on locus 2 x3 CRISPR array Location: 24426-25045 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 24426-25045 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 134305-134465 bp Num of repeats: 3 Spacers: s10-s11 CRISPR array Location: 134305-134465 bp Num of repeats: 3 Spacers: s10-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24426-25045 bp]: array | spacers
           [Locus range 134305-134465 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACYS010000002.1 Clostridioides difficile strain Lew001 genome assembly, contig: ERS007218SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 375920 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 193440-193535 bp Zoom in on locus 1 x2 CRISPR array Location: 193440-193535 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 193440-193535 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 193440-193535 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACYS010000001.1 Clostridioides difficile strain Lew001 genome assembly, contig: ERS007218SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 458334 bp; # of CRISPR array = 0; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29353-39076 bp 2 Locus 2: 90286-101244 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 29353-30462 bp Gene: cas14:cas14 Type: Type-V Location: 30615-31787 bp Gene: unk Type: unknown Location: 31815-32273 bp Gene: pfam01881:cas6 Type: other Location: 32587-33324 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 33329-34795 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 34815-35828 bp Gene: cd09693:cas5 Type: Type-I Location: 35844-36641 bp Gene: cd09641:cas3HD Type: Type-I Location: 36668-39076 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 90286-90771 bp Gene: cd06127:DEDDh Type: Type-I Location: 97574-98620 bp Gene: unk Type: unknown Location: 98992-99498 bp Gene: unk Type: unknown Location: 99911-100579 bp Gene: cd06127:DEDDh Type: Type-I Location: 100738-101244 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACYS010000012.1 Clostridioides difficile strain Lew001 genome assembly, contig: ERS007218SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 146402 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 76873-79927 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 76873-77033 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 76873-77033 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 79701-79927 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 79701-79927 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 76873-77033 bp]: array | spacers
           [Locus range 79701-79927 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACYS010000003.1 Clostridioides difficile strain Lew001 genome assembly, contig: ERS007218SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 294105 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 50501-50726 bp Zoom in on locus 1 x4 CRISPR array Location: 50501-50726 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 50501-50726 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 50501-50726 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAACYS010000007.1 Clostridioides difficile strain Lew001 genome assembly, contig: ERS007218SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 218980 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54303-54723 bp Zoom in on locus 1 x7 CRISPR array Location: 54303-54723 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 54303-54723 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 54303-54723 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)