CRISPRone

CRISPRone report for GCA_900684045.1_4880_7_3

♦ Seq 1: CAACYU010000005.1 Clostridioides difficile strain Lew003 genome assembly, contig: ERS007220SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 204461 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183105-183199 bp Zoom in on locus 1 x2 CRISPR array Location: 183105-183199 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 183105-183199 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 183105-183199 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACYU010000021.1 Clostridioides difficile strain Lew003 genome assembly, contig: ERS007220SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 48557 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23567-24187 bp Zoom in on locus 1 x10 CRISPR array Location: 23567-24187 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 23567-24187 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23567-24187 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACYU010000014.1 Clostridioides difficile strain Lew003 genome assembly, contig: ERS007220SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 115039 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29114-29275 bp Zoom in on locus 1 x3 CRISPR array Location: 29114-29275 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29114-29275 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29114-29275 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACYU010000003.1 Clostridioides difficile strain Lew003 genome assembly, contig: ERS007220SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 366243 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164259-164678 bp 2 Locus 2: 296650-299704 bp Zoom in on locus 1 x7 Zoom in on locus 2 x3 x4 CRISPR array Location: 164259-164678 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164259-164678 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 296650-296810 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 296650-296810 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 299478-299704 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 299478-299704 bp Num of repeats: 4 Spacers: s9-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164259-164678 bp]: array | spacers
           [Locus range 296650-296810 bp]: array | spacers
           [Locus range 299478-299704 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACYU010000001.1 Clostridioides difficile strain Lew003 genome assembly, contig: ERS007220SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 852752 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 343744-343970 bp 2 Locus 2: 423756-433479 bp 3 Locus 3: 484689-495647 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 343744-343970 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 343744-343970 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 423756-424865 bp Gene: cas14:cas14 Type: Type-V Location: 425018-426190 bp Gene: unk Type: unknown Location: 426218-426676 bp Gene: pfam01881:cas6 Type: other Location: 426990-427727 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 427732-429198 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 429218-430231 bp Gene: cd09693:cas5 Type: Type-I Location: 430247-431044 bp Gene: cd09641:cas3HD Type: Type-I Location: 431071-433479 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 484689-485174 bp Gene: cd06127:DEDDh Type: Type-I Location: 491977-493023 bp Gene: unk Type: unknown Location: 493395-493901 bp Gene: unk Type: unknown Location: 494314-494982 bp Gene: cd06127:DEDDh Type: Type-I Location: 495141-495647 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 343744-343970 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)