CRISPRone

CRISPRone report for GCA_900684125.1_4995_1_11

♦ Seq 1: CAACYX010000019.1 Clostridioides difficile strain Gla011 genome assembly, contig: ERS008996SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 53829 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21125-21219 bp Zoom in on locus 1 x2 CRISPR array Location: 21125-21219 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 21125-21219 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 21125-21219 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACYX010000004.1 Clostridioides difficile strain Gla011 genome assembly, contig: ERS008996SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 405437 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124574-125067 bp 2 Locus 2: 235388-236145 bp 3 Locus 3: 326874-331609 bp Zoom in on locus 1 x8 Zoom in on locus 2 x12 Zoom in on locus 3 x4 x4 x14 CRISPR array Location: 124574-125067 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 124574-125067 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 235388-236145 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 235388-236145 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 326874-327102 bp Num of repeats: 4 Spacers: s19-s21 CRISPR array Location: 326874-327102 bp Num of repeats: 4 Spacers: s19-s21 CRISPR array Location: 328706-328930 bp Num of repeats: 4 Spacers: s22-s24 CRISPR array Location: 328706-328930 bp Num of repeats: 4 Spacers: s22-s24 CRISPR array Location: 330723-331609 bp Num of repeats: 14 Spacers: s25-s37 CRISPR array Location: 330723-331609 bp Num of repeats: 14 Spacers: s25-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124574-125067 bp]: array | spacers
           [Locus range 235388-236145 bp]: array | spacers
           [Locus range 326874-327102 bp]: array | spacers
           [Locus range 328706-328930 bp]: array | spacers
           [Locus range 330723-331609 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACYX010000002.1 Clostridioides difficile strain Gla011 genome assembly, contig: ERS008996SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 438798 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110306-110466 bp Zoom in on locus 1 x3 CRISPR array Location: 110306-110466 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 110306-110466 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110306-110466 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACYX010000001.1 Clostridioides difficile strain Gla011 genome assembly, contig: ERS008996SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 571248 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244813-245171 bp 2 Locus 2: 318453-326774 bp 3 Locus 3: 490046-490663 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 244813-245171 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 244813-245171 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318453-319562 bp Gene: unk Type: unknown Location: 319996-320172 bp Gene: pfam01881:cas6 Type: other Location: 320273-321010 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 321015-322490 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322510-323526 bp Gene: cd09693:cas5 Type: Type-I Location: 323542-324339 bp Gene: cd09641:cas3HD Type: Type-I Location: 324366-326774 bp CRISPR array Location: 490046-490663 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 490046-490663 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244813-245171 bp]: array | spacers
           [Locus range 490046-490663 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACYX010000007.1 Clostridioides difficile strain Gla011 genome assembly, contig: ERS008996SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 318963 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252722-263793 bp Zoom in on locus 1 x24 CRISPR array Location: 252722-254255 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 252722-254255 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09725:cas2 Type: universal Location: 254439-254705 bp Gene: cd09722:cas1 Type: universal Location: 254708-255688 bp Gene: pfam01930:cas4 Type: Type-I Location: 255691-256209 bp Gene: COG1203:cas3 Type: Type-I Location: 256257-258578 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258589-259290 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259292-260206 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260208-262058 bp Gene: pfam01881:cas6 Type: other Location: 262064-262858 bp Gene: pfam13280:WYL Type: other Location: 262879-263793 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252722-254255 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAACYX010000016.1 Clostridioides difficile strain Gla011 genome assembly, contig: ERS008996SCcontig000016, whole genome shotgun sequence

⇒Summary: seq-len = 64970 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3842-4858 bp Zoom in on locus 1 x16 CRISPR array Location: 3842-4858 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 3842-4858 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3842-4858 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAACYX010000005.1 Clostridioides difficile strain Gla011 genome assembly, contig: ERS008996SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 335023 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90557-91108 bp 2 Locus 2: 247255-248142 bp Zoom in on locus 1 x9 Zoom in on locus 2 x14 CRISPR array Location: 90557-91108 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 90557-91108 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 247255-248142 bp Num of repeats: 14 Spacers: s9-s21 CRISPR array Location: 247255-248142 bp Num of repeats: 14 Spacers: s9-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90557-91108 bp]: array | spacers
           [Locus range 247255-248142 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)